RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CAPS2Q9BXY5 557 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DPY30Q9C005 99 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TUT1Q9H6E5 874 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 CRLS1Q9UJA2 301 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TNPO3Q9Y5L0 923 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 E2F8A0AVK6 867 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 C5orf51A6NDU8 294 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 XPO1O14980 1071 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 FLRT2O43155 660 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 HOXA2O43364 376 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TRAPPC3O43617 180 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SCN2BO60939 215 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GSSP48637 474 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ABATP80404 500 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 C2orf54Q08AI8 447 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 USP4Q13107 963 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BOP1Q14137 746 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF234Q14588 700 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ATCAYQ86WG3 371 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SLFN12Q8IYM2 578 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ADGRG2Q8IZP9 1017 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 HDDC3Q8N4P3 179 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 COPS4Q9BT78 406 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 AASDHPPTQ9NRN7 309 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 THG1LQ9NWX6 298 aaKnown RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GRIP1Q9Y3R0 1128 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 COLEC10Q9Y6Z7 277 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF839A8K0R7 811 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 K7ERI5 159 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 OMPP47874 163 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PLGLB1Q02325 96 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 SP3Q02447 781 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MTAPQ13126 283 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TBRG1Q3YBR2 411 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 GXYLT1Q4G148 440 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 MFSD14BQ5SR56 506 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 LRRC69Q6ZNQ3 347 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ARMCX6Q7L4S7 300 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 STK32CQ86UX6 486 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 DPH3Q96FX2 82 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 LRFN5Q96NI6 719 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 OMDQ99983 421 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 ECSITQ9BQ95 431 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 NT5C3AQ9H0P0 336 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 FOXP1Q9H334 677 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 TOPORSQ9NS56 1045 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-202ENST00000375405 BLOC1S6Q9UL45 172 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 PCDHGC3Q9UN70 934 aa4.79□□□□□ -1.64
SCN1A-202ENST00000375405 KIAA1107Q9UPP5 1409 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF532Q9HCE3 1301 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MGAT4DA6NG13 374 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TNPO2O14787 897 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 IRF6O14896 467 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RAD17O75943 681 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PTPN6P29350 595 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF157P51786 506 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CTDSPL2Q05D32 466 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 E2F2Q14209 437 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RARS2Q5T160 578 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MZT2BQ6NZ67 158 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PSRC1Q6PGN9 363 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GHDCQ8N2G8 530 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 C12orf50Q8NA57 414 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NEDD1Q8NHV4 660 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SNX33Q8WV41 574 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PGBD4Q96DM1 585 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 WDR12Q9GZL7 423 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SEMA6CQ9H3T2 930 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 VTA1Q9NP79 307 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 FAM153AQ9UHL3 310 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 NRBP1Q9UHY1 535 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 USP21Q9UK80 565 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 DYRK1BQ9Y463 629 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 STX7O15400 261 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ZNF862O60290 1169 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 LARGE1O95461 756 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ACSL3O95573 720 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TUBBP07437 444 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 MTHFD1P11586 935 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GAP43P17677 238 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 PLTPP55058 493 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 BYSLQ13895 437 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CCINQ13939 588 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GFOD2Q3B7J2 385 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 FAM47AQ5JRC9 791 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 TRMT11Q7Z4G4 463 aaKnown RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 THAP5Q7Z6K1 395 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SLC9B2Q86UD5 537 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 LRRC6Q86X45 466 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 EZH1Q92800 747 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 RMND5BQ96G75 393 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 CCNL2Q96S94 520 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 OSBPL11Q9BXB4 747 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ACE2Q9BYF1 805 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-202ENST00000375405 SAP130Q9H0E3 1048 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 WWOXQ9NZC7 414 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 UBP1Q9NZI7 540 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 GLS2Q9UI32 602 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ABCG2Q9UNQ0 655 aa4.78□□□□□ -1.64
SCN1A-202ENST00000375405 ERICH3Q5RHP9 1530 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms