RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ADGRD1Q6QNK2 874 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 USP50Q70EL3 339 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 ACOT1Q86TX2 421 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 MRPL45Q9BRJ2 306 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 NGRNQ9NPE2 291 aaKnown RBP22.74■■□□□ 1.23
SHMT1-202ENST00000352886 FAM49BQ9NUQ9 324 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 PHTF1Q9UMS5 762 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 CHMP2BQ9UQN3 213 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 SNX9Q9Y5X1 595 aa22.74■■□□□ 1.23
SHMT1-202ENST00000352886 STILQ15468 1287 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 PDK4Q16654 411 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 KIZQ2M2Z5 673 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 RNF43Q68DV7 783 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 RNF157Q96PX1 679 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 DHRS4Q9BTZ2 278 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 SLCO1B3Q9NPD5 702 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 CFAP73A6NFT4 308 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 H7C0C1 242 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 PPEF2O14830 753 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 CHUKO15111 745 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 NPTXRO95502 500 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 ATP5OP48047 213 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 ACVR2BQ13705 512 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 OLFML1Q6UWY5 402 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 TTC30AQ86WT1 665 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 ECHDC2Q86YB7 292 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 GPATCH2LQ9NWQ4 482 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 STARD13Q9Y3M8 1113 aa22.73■■□□□ 1.23
SHMT1-202ENST00000352886 SNAI1O95863 264 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 EPHX2P34913 555 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 TMEM62Q0P6H9 643 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 ZC3H12AQ5D1E8 599 aaKnown RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 HHATQ5VTY9 493 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 RGS9BPQ6ZS82 235 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 MAP7D3Q8IWC1 876 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 ZC3H15Q8WU90 426 aaKnown RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 GTF3C2Q8WUA4 911 aaPredicted RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 SLC10A4Q96EP9 437 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 THOC1Q96FV9 657 aaKnown RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 ZMAT2Q96NC0 199 aaKnown RBP22.72■■□□□ 1.23
SHMT1-202ENST00000352886 SNTG2Q9NY99 539 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 MSH2P43246 934 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 C9orf131Q5VYM1 1079 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 ZNF410Q86VK4 478 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 IGDCC3Q8IVU1 814 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 LRRC8CQ8TDW0 803 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 FAM172AQ8WUF8 416 aa22.72■■□□□ 1.23
SHMT1-202ENST00000352886 RALGAPA2Q2PPJ7 1873 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 PDHXO00330 501 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 ATP2A2P16615 1042 aaKnown RBP22.71■■□□□ 1.23
SHMT1-202ENST00000352886 GBP2P32456 591 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-202ENST00000352886 ELK3P41970 407 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 DCAF4L1Q3SXM0 396 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 PKDCCQ504Y2 493 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 LDLRAD1Q5T700 205 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 LVRNQ6Q4G3 990 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 FAM228AQ86W67 206 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 SCUBE3Q8IX30 993 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 PLD5Q8N7P1 536 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 DCAKDQ8WVC6 231 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 SSU72Q9NP77 194 aaKnown RBP22.71■■□□□ 1.23
SHMT1-202ENST00000352886 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.71■■□□□ 1.23
SHMT1-202ENST00000352886 IL4RP24394 825 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 KCNJ2P63252 427 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 KCNJ11Q14654 390 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 PDK2Q15119 407 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 SWT1Q5T5J6 900 aaKnown RBP22.71■■□□□ 1.23
SHMT1-202ENST00000352886 MZB1Q8WU39 189 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 NME7Q9Y5B8 376 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 HEY1Q9Y5J3 304 aa22.71■■□□□ 1.23
SHMT1-202ENST00000352886 DPYSL4O14531 572 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 ZWINTO95229 277 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 MMP3P08254 477 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 SMPD1P17405 629 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 SDC4P31431 198 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 BOLA3Q53S33 107 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 PNMA8AQ86V59 439 aaPredicted RBP22.7■■□□□ 1.22
SHMT1-202ENST00000352886 FAF2Q96CS3 445 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 USP29Q9HBJ7 922 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 SETD4Q9NVD3 440 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 TUBGCP4Q9UGJ1 667 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 KCNN4O15554 427 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 HOXA11P31270 313 aaPredicted RBP22.7■■□□□ 1.22
SHMT1-202ENST00000352886 SLC6A3Q01959 620 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 ANKLE1Q8NAG6 615 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 KHSRPQ92945 711 aaKnown RBP eCLIP22.7■■□□□ 1.22
SHMT1-202ENST00000352886 SLC4A5Q9BY07 1137 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 RAB6BQ9NRW1 208 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 HES2Q9Y543 173 aa22.7■■□□□ 1.22
SHMT1-202ENST00000352886 KBTBD13C9JR72 458 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 GOLGA8RI6L899 631 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 APOL1O14791 398 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 EDF1O60869 148 aaKnown RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 MAP3K6O95382 1288 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 TSHRP16473 764 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 YARSP54577 528 aaKnown RBP22.69■■□□□ 1.22
SHMT1-202ENST00000352886 CA9Q16790 459 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 GLRA4Q5JXX5 417 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 TMEM110Q86TL2 294 aa22.69■■□□□ 1.22
SHMT1-202ENST00000352886 PQLC3Q8N755 202 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms