RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 SMYD5Q6GMV2 418 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 PLPPR4Q7Z2D5 763 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 PHF13Q86YI8 300 aaPredicted RBP16.56■□□□□ 0.24
HMGA1-202ENST00000347617 PPIL6Q8IXY8 311 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 RAB3IL1Q8TBN0 382 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 PYROXD1Q8WU10 500 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 MFSD14AQ96MC6 490 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 PAFAH2Q99487 392 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 WWP1Q9H0M0 922 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 R3HDMLQ9H3Y0 253 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 DHX33Q9H6R0 707 aaKnown RBP16.56■□□□□ 0.24
HMGA1-202ENST00000347617 CHCHD3Q9NX63 227 aaKnown RBP16.56■□□□□ 0.24
HMGA1-202ENST00000347617 CIDEBQ9UHD4 219 aa16.56■□□□□ 0.24
HMGA1-202ENST00000347617 ATP9BO43861 1147 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 ITGBL1O95965 494 aaPredicted RBP16.55■□□□□ 0.24
HMGA1-202ENST00000347617 MT-ND3P03897 115 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 PGK2P07205 417 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 STAT5BP51692 787 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 NEK3P51956 506 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 SLC18A2Q05940 514 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 OASLQ15646 514 aaKnown RBP16.55■□□□□ 0.24
HMGA1-202ENST00000347617 MAP3K21Q5TCX8 1036 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 IZUMO2Q6UXV1 221 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 CCNJLQ8IV13 435 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 MAP4K3Q8IVH8 894 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 DTX3LQ8TDB6 740 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 FAM161BQ96MY7 647 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 C7orf26Q96N11 449 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 SLITRK1Q96PX8 696 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 SIKE1Q9BRV8 207 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 PORCNQ9H237 461 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 KMT5AQ9NQR1 393 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 C1orf112Q9NSG2 853 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 SEPT9Q9UHD8 586 aaPredicted RBP16.55■□□□□ 0.24
HMGA1-202ENST00000347617 TAGLN3Q9UI15 199 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 DNPEPQ9ULA0 475 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 STRIP2Q9ULQ0 834 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 TBX20Q9UMR3 447 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 EFR3BQ9Y2G0 817 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 GMEB1Q9Y692 573 aa16.55■□□□□ 0.24
HMGA1-202ENST00000347617 RBM47A0AV96 593 aaKnown RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FAM170AA1A519 330 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 TMEM150BA6NC51 233 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 B2RBV5 119 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 I3L4J1 428 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 LPXNO60711 386 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 TAS2R40P59535 323 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 GPX6P59796 221 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 ASPHQ12797 758 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 CBLBQ13191 982 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 TTLL4Q14679 1199 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 LLGL1Q15334 1064 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FAM110CQ1W6H9 321 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 PABPC1LQ4VXU2 614 aaKnown RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 ATG16L1Q676U5 607 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 MAMDC4Q6UXC1 1216 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 LRRC6Q86X45 466 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 TTC13Q8NBP0 860 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 DCAKDQ8WVC6 231 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FBXL18Q96ME1 805 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 CYTH2Q99418 400 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 PCYT2Q99447 389 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 SUDS3Q9H7L9 328 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 VTA1Q9NP79 307 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 XPNPEP1Q9NQW7 623 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FARP1Q9Y4F1 1045 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 ARID2Q68CP9 1835 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 GAS2O43903 313 aaKnown RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 UBTFL6P0CB48 400 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 GLRA2P23416 452 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 OVGP1Q12889 678 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 IRF5Q13568 498 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FASTKD3Q14CZ7 662 aaKnown RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 BRDTQ58F21 947 aaPredicted RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 CST9Q5W186 159 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 KBTBD2Q8IY47 623 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 FEZF2Q8TBJ5 459 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 GPR20Q99678 358 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 ACP6Q9NPH0 428 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 GPRC5CQ9NQ84 441 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 METTL5Q9NRN9 209 aaKnown RBP16.54■□□□□ 0.24
HMGA1-202ENST00000347617 PARVAQ9NVD7 372 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 TELO2Q9Y4R8 837 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 NUMBLQ9Y6R0 609 aa16.54■□□□□ 0.24
HMGA1-202ENST00000347617 CLUHO75153 1309 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 DOCK5Q9H7D0 1870 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 CAPN14A8MX76 684 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 SLC16A4O15374 487 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 MYL2P10916 166 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 TCF7P36402 384 aaPredicted RBP16.53■□□□□ 0.24
HMGA1-202ENST00000347617 ETV4P43268 484 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 TAP1Q03518 808 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 GRM2Q14416 872 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 DBN1Q16643 649 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 JADE3Q92613 823 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 ARHGAP28Q9P2N2 729 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 PLA2G4CQ9UP65 541 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 IVNS1ABPQ9Y6Y0 642 aa16.53■□□□□ 0.24
HMGA1-202ENST00000347617 KRT1P04264 644 aa16.52■□□□□ 0.24
HMGA1-202ENST00000347617 CD58P19256 250 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms