RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 OLFML1Q6UWY5 402 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 ATP11CQ8NB49 1132 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 MAML3Q96JK9 1138 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 OSMRQ99650 979 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 APOL6Q9BWW8 343 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 MIS12Q9H081 205 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 DPEP3Q9H4B8 488 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 PSMC3IPQ9P2W1 217 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-201ENST00000343916 GJD2Q9UKL4 321 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 GABBR2O75899 941 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 TFE3P19532 575 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-201ENST00000343916 CA4P22748 312 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 NR1H3Q13133 447 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 DNAJC3Q13217 504 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 KRT81Q14533 505 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 CA9Q16790 459 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 SMYD5Q6GMV2 418 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 CATSPER4Q7RTX7 472 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 IGDCC3Q8IVU1 814 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.21■□□□□ 0.83
COL9A3-201ENST00000343916 DENND1AQ8TEH3 1009 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 FAM172AQ8WUF8 416 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 BRI3BPQ8WY22 251 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 RMDN2Q96LZ7 410 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 CHMP2BQ9UQN3 213 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 HEY1Q9Y5J3 304 aa20.21■□□□□ 0.83
COL9A3-201ENST00000343916 H7C0C1 242 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 STRNO43815 780 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 STAU1O95793 577 aaKnown RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 KRT4P19013 534 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 IL4RP24394 825 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 RDXP35241 583 aaKnown RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 ATP5OP48047 213 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 GCLCP48506 637 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 YARSP54577 528 aaKnown RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 GPR162Q16538 588 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 DGKDQ16760 1214 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 PKDCCQ504Y2 493 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 EFHC2Q5JST6 749 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 CYB5D1Q6P9G0 228 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 ZNF410Q86VK4 478 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 PALM2Q8IXS6 379 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 PDIK1LQ8N165 341 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 C7orf31Q8N865 590 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 PITPNM3Q9BZ71 974 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 ADAMTS10Q9H324 1103 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 NXF3Q9H4D5 531 aaKnown RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 NDC80O14777 642 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 AVILO75366 819 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 DNAJC8O75937 253 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 AKAP5P24588 427 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 XRCC4Q13426 336 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 SLC1A5Q15758 541 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 OR6B3Q8NGW1 331 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 CLEC4CQ8WTT0 213 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 KHSRPQ92945 711 aaKnown RBP eCLIP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 RNF157Q96PX1 679 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 PAFAH2Q99487 392 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 SLCO1B3Q9NPD5 702 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 KIAA1257Q9ULG3 409 aa20.2■□□□□ 0.82
COL9A3-201ENST00000343916 ZMYND8Q9ULU4 1186 aaPredicted RBP20.2■□□□□ 0.82
COL9A3-201ENST00000343916 E7ESA3 106 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 PRPF4O43172 522 aaKnown RBP eCLIP20.19■□□□□ 0.827e-7■■■■□ 21.1
COL9A3-201ENST00000343916 PAPSS1O43252 624 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-201ENST00000343916 MGAT5Q09328 741 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 ACVR2BQ13705 512 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 MTFR1Q15390 333 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 PRAMEF19Q5SWL8 479 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 NT5DC4Q86YG4 428 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 GTF3C2Q8WUA4 911 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-201ENST00000343916 SNX27Q96L92 541 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 CXorf56Q9H5V9 222 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 SLC24A2Q9UI40 661 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 PHBP35232 272 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 PLD5Q8N7P1 536 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 NPLOC4Q8TAT6 608 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 SLC35F5Q8WV83 523 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 KLF6Q99612 283 aaPredicted RBP20.19■□□□□ 0.82
COL9A3-201ENST00000343916 TINF2Q9BSI4 451 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 MAGEB5Q9BZ81 275 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 PRKAG3Q9UGI9 489 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 ARL2BPQ9Y2Y0 163 aa20.19■□□□□ 0.82
COL9A3-201ENST00000343916 GOLGA8RI6L899 631 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 GPR32O75388 356 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 SDC4P31431 198 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 ELK3P41970 407 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 ATXN1P54253 815 aaKnown RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 DCAF4L1Q3SXM0 396 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 PPP6R3Q5H9R7 873 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 FAXCQ5TGI0 409 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 SLC27A1Q6PCB7 646 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 ZNF467Q7Z7K2 595 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 PARP9Q8IXQ6 854 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 FITM2Q8N6M3 262 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 LENG1Q96BZ8 264 aaPredicted RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 SNRNP25Q9BV90 132 aaKnown RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 C12orf65Q9H3J6 166 aaKnown RBP20.18■□□□□ 0.82
COL9A3-201ENST00000343916 ACSS3Q9H6R3 686 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 CLEC11AQ9Y240 323 aa20.18■□□□□ 0.82
COL9A3-201ENST00000343916 GLTPD2A6NH11 291 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms