RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SLC18A3Q16572 532 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 C2CD6Q53TS8 623 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 ACAD10Q6JQN1 1059 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 SMRP1Q8NCR6 262 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 ULBP1Q9BZM6 244 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 SYNCQ9H7C4 482 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 CNGB3Q9NQW8 809 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 SCML2Q9UQR0 700 aa23.33■■□□□ 1.33
SDC3-202ENST00000339394 MTCL1Q9Y4B5 1905 aaKnown RBP23.32■■□□□ 1.32
SDC3-202ENST00000339394 ERBB2P04626 1255 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 EPHA5P54756 1037 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 NTHL1P78549 312 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 PABPC1LQ4VXU2 614 aaKnown RBP23.32■■□□□ 1.32
SDC3-202ENST00000339394 PM20D1Q6GTS8 502 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 TMEM139Q8IV31 216 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 FBXO32Q969P5 355 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 C18orf8Q96DM3 657 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 MIS12Q9H081 205 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 IL21Q9HBE4 155 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 UXTQ9UBK9 157 aaPredicted RBP23.32■■□□□ 1.32
SDC3-202ENST00000339394 CHORDC1Q9UHD1 332 aaPredicted RBP23.32■■□□□ 1.32
SDC3-202ENST00000339394 CD207Q9UJ71 328 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 NAGPAQ9UK23 515 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 C5orf42Q9H799 3197 aa23.32■■□□□ 1.32
SDC3-202ENST00000339394 PAPSS1O43252 624 aaPredicted RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 GABRB2P47870 512 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 SNX16P57768 344 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 ATAT1Q5SQI0 421 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 CYP4A22Q5TCH4 519 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 ALKBH5Q6P6C2 394 aaKnown RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 MMS22LQ6ZRQ5 1243 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 GAREM2Q75VX8 874 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 DNAAF5Q86Y56 855 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 PHF13Q86YI8 300 aaPredicted RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 LRRC8AQ8IWT6 810 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 MSANTD4Q8NCY6 345 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 IPO4Q8TEX9 1081 aaKnown RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 CLEC4CQ8WTT0 213 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 NDRG1Q92597 394 aaKnown RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 SLITRK1Q96PX8 696 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 ADAM22Q9P0K1 906 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 SOWAHDA6NJG2 315 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 FBXO21O94952 628 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 FTLP02792 175 aaPredicted RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 MYL4P12829 197 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 GABRR2P28476 465 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 CCR2P41597 374 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 PTP4A2Q12974 167 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 CCDC122Q5T0U0 273 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 PDZD4Q76G19 769 aaPredicted RBP23.31■■□□□ 1.32
SDC3-202ENST00000339394 TMEM150AQ86TG1 271 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 CCDC170Q8IYT3 715 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 LEMD2Q8NC56 503 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 C11orf70Q9BRQ4 267 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 ISCUQ9H1K1 167 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 SPTLC3Q9NUV7 552 aa23.31■■□□□ 1.32
SDC3-202ENST00000339394 UNC80Q8N2C7 3258 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 RTN2O75298 545 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 F11P03951 625 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 PGFP49763 221 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 DAOAP59103 153 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 SLC5A9Q2M3M2 681 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 PPP1R2P3Q6NXS1 205 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 MON1BQ7L1V2 547 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 BHLHA9Q7RTU4 235 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 SCML4Q8N228 414 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 TCEAL4Q96EI5 215 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 WDR6Q9NNW5 1121 aaKnown RBP23.3■■□□□ 1.32
SDC3-202ENST00000339394 GMIPQ9P107 970 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 NENFQ9UMX5 172 aa23.3■■□□□ 1.32
SDC3-202ENST00000339394 A0A1W2PRU2 124 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 NRG2O14511 850 aaPredicted RBP23.29■■□□□ 1.32
SDC3-202ENST00000339394 TADA3O75528 432 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 MRPS5P82675 430 aaKnown RBP23.29■■□□□ 1.32
SDC3-202ENST00000339394 C1QBPQ07021 282 aaKnown RBP23.29■■□□□ 1.32
SDC3-202ENST00000339394 FAM183BPQ6ZVS7 135 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 MON1AQ86VX9 555 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 MCOLN2Q8IZK6 566 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 OVCA2Q8WZ82 227 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 RIPOR3Q96MK2 946 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 AVENQ9NQS1 362 aaPredicted RBP23.29■■□□□ 1.32
SDC3-202ENST00000339394 COG5Q9UP83 839 aa23.29■■□□□ 1.32
SDC3-202ENST00000339394 YJEFN3A6XGL0 299 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 E7ENQ6 273 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 FGF19O95750 216 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 CALB1P05937 261 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 ZDHHC11BP0C7U3 371 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 CDC25CP30307 473 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 CCDC173Q0VFZ6 552 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 MTF1Q14872 753 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 PRSS36Q5K4E3 855 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 OR6B2Q6IFH4 312 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 XYLT1Q86Y38 959 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 ZDHHC17Q8IUH5 632 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 PDZD8Q8NEN9 1154 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 PIWIL1Q96J94 861 aaKnown RBP23.28■■□□□ 1.32
SDC3-202ENST00000339394 VCPIP1Q96JH7 1222 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 ATXN3LQ9H3M9 355 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 NMUR1Q9HB89 426 aa23.28■■□□□ 1.32
SDC3-202ENST00000339394 TRPM5Q9NZQ8 1165 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms