RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MRPL1Q9BYD6 325 aaKnown RBP10.54□□□□□ -0.72
CHD3-201ENST00000330494 TSPAN16Q9UKR8 245 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 SALL3Q9BXA9 1300 aa10.54□□□□□ -0.72
CHD3-201ENST00000330494 KDM4FA0A1W2PPD8 638 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 ANKRD63C9JTQ0 380 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 ARIH2O95376 493 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 TPH1P17752 444 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 IL10P22301 178 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 DLG4P78352 724 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 ACVR2BQ13705 512 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 GALNTL6Q49A17 601 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 FBXO47Q5MNV8 452 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 FAM171A1Q5VUB5 890 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 REPS2Q8NFH8 660 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 FICDQ9BVA6 458 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 CIPCQ9C0C6 399 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 IGFLR1Q9H665 355 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 TEKT2Q9UIF3 430 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 H7C4K7 107 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 AP3B1O00203 1094 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 STX7O15400 261 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 SRP72O76094 671 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 URODP06132 367 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MRPS15P82914 257 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 PTPN11Q06124 597 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 KRT72Q14CN4 511 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MAPRE1Q15691 268 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 NAPEPLDQ6IQ20 393 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MOXD1Q6UVY6 613 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 GRAMD1AQ96CP6 724 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 WNK4Q96J92 1243 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 NEUROG2Q9H2A3 272 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 C10orf88Q9H8K7 445 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 AAASQ9NRG9 546 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 RNF112Q9ULX5 631 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 TRAF3IP3Q9Y228 551 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 JCHAINP01591 159 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 OCM2P0CE71 109 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 OCMP0CE72 109 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 MAPK7Q13164 816 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 POLD3Q15054 466 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 ANKS3Q6ZW76 656 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 ARHGAP18Q8N392 663 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 ARRDC4Q8NCT1 418 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 B4GALNT2Q8NHY0 566 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 CYGBQ8WWM9 190 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 SMAD5Q99717 465 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 RANBP17Q9H2T7 1088 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 MRPL40Q9NQ50 206 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 C5orf58C9J3I9 102 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 EIF3HO15372 352 aaKnown RBP eCLIP10.53□□□□□ -0.725e-6■■■□□ 14.9
CHD3-201ENST00000330494 CAND2O75155 1236 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MUTP22033 750 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 UGP2Q16851 508 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 LRIG3Q6UXM1 1119 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 TMC7Q7Z402 723 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 KRT35Q92764 455 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 XPNPEP3Q9NQH7 507 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 RHBDL2Q9NX52 303 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 SPASTQ9UBP0 616 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 LRRIQ3A6PVS8 624 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 TARSP26639 723 aaKnown RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 POU4F1Q01851 419 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 CENPPQ6IPU0 288 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MTG1Q9BT17 334 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 STOML1Q9UBI4 398 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 VPS28Q9UK41 221 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 TRIM17Q9Y577 477 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 LZTS3O60299 673 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 FKBP9O95302 570 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 GJB1P08034 283 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 RFX3P48380 749 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 MFSD4BQ5TF39 518 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 FKBP9P1Q75LS8 142 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 PTAR1Q7Z6K3 402 aaPredicted RBP10.53□□□□□ -0.72
CHD3-201ENST00000330494 WWOXQ9NZC7 414 aa10.53□□□□□ -0.72
CHD3-201ENST00000330494 CYP2F1P24903 491 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 ATP6V1E1P36543 226 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 SERPINB5P36952 375 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 CASP5P51878 434 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 FLOT2Q14254 428 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 TCEA2Q15560 299 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 CES3Q6UWW8 571 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 C16orf59Q7L2K0 433 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 MRPS31Q92665 395 aaKnown RBP10.52□□□□□ -0.72
CHD3-201ENST00000330494 FAM162AQ96A26 154 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 E2F7Q96AV8 911 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 PTPRHQ9HD43 1115 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 ACP6Q9NPH0 428 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 TRMT6Q9UJA5 497 aaKnown RBP10.52□□□□□ -0.72
CHD3-201ENST00000330494 HES2Q9Y543 173 aa10.52□□□□□ -0.72
CHD3-201ENST00000330494 RGS4P49798 205 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 BFSP2Q13515 415 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 MAPRE2Q15555 327 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 BOLA3Q53S33 107 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 CERS5Q8N5B7 392 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 PCSK9Q8NBP7 692 aaKnown RBP10.52□□□□□ -0.73
CHD3-201ENST00000330494 SENP6Q9GZR1 1112 aaPredicted RBP10.52□□□□□ -0.73
CHD3-201ENST00000330494 PIF1Q9H611 641 aa10.52□□□□□ -0.73
CHD3-201ENST00000330494 TMEM39AQ9NV64 488 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms