RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ATP6V0D2Q8N8Y2 350 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 GLIS3Q8NEA6 775 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 TBC1D15Q8TC07 691 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 RPGRQ92834 1020 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 NSUN4Q96CB9 384 aaKnown RBP12.33□□□□□ -0.44
SHMT2-201ENST00000328923 WNK4Q96J92 1243 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 HERC2P3Q9BVR0 1158 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 SEZ6LQ9BYH1 1024 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KCTD10Q9H3F6 313 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 KIAA1586Q9HCI6 787 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 PCYOX1Q9UHG3 505 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 CORINQ9Y5Q5 1042 aa12.33□□□□□ -0.44
SHMT2-201ENST00000328923 SYNGAP1Q96PV0 1343 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TP73O15350 636 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 INHBBP09529 407 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TMEM253P0C7T8 217 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 RAG1P15918 1043 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PTGER2P43116 358 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 KCNJ1P48048 391 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 NKX2-5P52952 324 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 IST1P53990 364 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CTBSQ01459 385 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 KRT76Q01546 638 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PPATQ06203 517 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CCNIQ14094 377 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 C15orf59Q2T9L4 293 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TRIM16LQ309B1 348 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PRR23CQ6ZRP0 262 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ALYREFQ86V81 257 aaKnown RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TBCKQ8TEA7 893 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 SCFD1Q8WVM8 642 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 MAML1Q92585 1016 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 THAP11Q96EK4 314 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TTC25Q96NG3 672 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ZBED2Q9BTP6 218 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CALN1Q9BXU9 219 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 KANSL2Q9H9L4 492 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 KCNK13Q9HB14 408 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PCDH12Q9NPG4 1184 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 IL17RBQ9NRM6 502 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 THAP1Q9NVV9 213 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 NINJ2Q9NZG7 142 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PI4KBQ9UBF8 816 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 GNPTGQ9UJJ9 305 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 DSEQ9UL01 958 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PCDHA2Q9Y5H9 948 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 C10orf71Q711Q0 1435 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 hCG_1984214I3L0E3 225 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 PSMD12O00232 456 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ALOX15BO15296 676 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TCEA3O75764 348 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ESRRBO95718 433 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 GGPS1O95749 300 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 SERPINB2P05120 415 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 POLR2MP0CAP2 368 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ALAS1P13196 640 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CCDC130P13994 396 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ZNF23P17027 643 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CA4P22748 312 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 JAK1P23458 1154 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 S100A5P33763 92 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 HNRNPFP52597 415 aaKnown RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 STAT2P52630 851 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ITGADQ13349 1161 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TRIM71Q2Q1W2 868 aaKnown RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CRY2Q49AN0 593 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 CEP78Q5JTW2 689 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 EFHC1Q5JVL4 640 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 AGAP9Q5VTM2 703 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TRABD2AQ86V40 505 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 SNX29Q8TEQ0 813 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ALG3Q92685 438 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 C8orf48Q96LL4 319 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TRIM55Q9BYV6 548 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 Q9H521 79 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 SMYD3Q9H7B4 428 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 ZNF304Q9HCX3 659 aa12.32□□□□□ -0.44
SHMT2-201ENST00000328923 BMP2KQ9NSY1 1161 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 TYW1Q9NV66 732 aaKnown RBP12.32□□□□□ -0.44
SHMT2-201ENST00000328923 SMCO2A6NFE2 343 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 MEI4A8MW99 385 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 PRPF4O43172 522 aaKnown RBP eCLIP12.31□□□□□ -0.441e-8■■■□□ 17.5
SHMT2-201ENST00000328923 CXCR2P25025 360 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 PRDX5P30044 214 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ARHGAP4P98171 946 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 CALCOCO2Q13137 446 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 SELENBP1Q13228 472 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 HYIQ5T013 277 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 C6orf52Q5T4I8 152 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 LVRNQ6Q4G3 990 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 LSMEM2Q8N112 164 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 REXO1Q8N1G1 1221 aaKnown RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 DTX3Q8N9I9 347 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 TSPAN14Q8NG11 270 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 GRIN3AQ8TCU5 1115 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 ADAM33Q9BZ11 813 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 TRABDQ9H4I3 376 aa12.31□□□□□ -0.44
SHMT2-201ENST00000328923 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-201ENST00000328923 HDAC9Q9UKV0 1011 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms