RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 PKDCCQ504Y2 493 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 EFHC2Q5JST6 749 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 PRAMEF19Q5SWL8 479 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 C3orf62Q6ZUJ4 267 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 NT5DC4Q86YG4 428 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 FAM172AQ8WUF8 416 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 KHSRPQ92945 711 aaKnown RBP eCLIP20.96■□□□□ 0.95
VPS53-201ENST00000291074 LENG1Q96BZ8 264 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 TINF2Q9BSI4 451 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 PSMC3IPQ9P2W1 217 aaPredicted RBP20.96■□□□□ 0.95
VPS53-201ENST00000291074 KIAA1257Q9ULG3 409 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 CHMP2BQ9UQN3 213 aa20.96■□□□□ 0.95
VPS53-201ENST00000291074 HGSO14964 777 aaPredicted RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 ASMTLO95671 621 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 IGDCC3Q8IVU1 814 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 ATP11CQ8NB49 1132 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 FBF1Q8TES7 1133 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 MORF4L1Q9UBU8 362 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 SLC12A4Q9UP95 1085 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 DNAH12Q6ZR08 3092 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 H7C0C1 242 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 NDC80O14777 642 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 PAPSS1O43252 624 aaPredicted RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 UBOX5O94941 541 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 HOXD8P13378 290 aaPredicted RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 IL4RP24394 825 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 AKAP5P24588 427 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 ATP5OP48047 213 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 YARSP54577 528 aaKnown RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 NR1H3Q13133 447 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 GRB14Q14449 540 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 SLC27A1Q6PCB7 646 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 OR6B3Q8NGW1 331 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 TRAF3IP1Q8TDR0 691 aaPredicted RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 DENND1AQ8TEH3 1009 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 CLEC4CQ8WTT0 213 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 SGSM3Q96HU1 749 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 RNF157Q96PX1 679 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 SMC6Q96SB8 1091 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 ZMYND8Q9ULU4 1186 aaPredicted RBP20.95■□□□□ 0.94
VPS53-201ENST00000291074 HEY1Q9Y5J3 304 aa20.95■□□□□ 0.94
VPS53-201ENST00000291074 E7ESA3 106 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 GPR32O75388 356 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 SUN1O94901 812 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 GCLCP48506 637 aaPredicted RBP20.94■□□□□ 0.94
VPS53-201ENST00000291074 GEMIN4P57678 1058 aaKnown RBP20.94■□□□□ 0.94
VPS53-201ENST00000291074 UPF1Q92900 1129 aaKnown RBP eCLIP20.94■□□□□ 0.94
VPS53-201ENST00000291074 THOC1Q96FV9 657 aaKnown RBP20.94■□□□□ 0.94
VPS53-201ENST00000291074 SLC24A2Q9UI40 661 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 CA4P22748 312 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 IL9RQ01113 521 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 SLC1A5Q15758 541 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 FUKQ8N0W3 1084 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 C7orf31Q8N865 590 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 RMDN2Q96LZ7 410 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 PAFAH2Q99487 392 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 SNRNP25Q9BV90 132 aaKnown RBP20.94■□□□□ 0.94
VPS53-201ENST00000291074 GCOM2Q9BZD3 368 aaPredicted RBP20.94■□□□□ 0.94
VPS53-201ENST00000291074 ABHD16BQ9H3Z7 469 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 KLC4Q9NSK0 619 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 KLK14Q9P0G3 267 aa20.94■□□□□ 0.94
VPS53-201ENST00000291074 PRPF4O43172 522 aaKnown RBP eCLIP20.93■□□□□ 0.941e-8■■□□□ 11.6
VPS53-201ENST00000291074 DYNC1LI2O43237 492 aaPredicted RBP20.93■□□□□ 0.94
VPS53-201ENST00000291074 RECQL4O94761 1208 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 DNAJC3Q13217 504 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 HIC1Q14526 733 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 ZBTB6Q15916 424 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PDIK1LQ8N165 341 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 TTC39CQ8N584 583 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PQLC3Q8N755 202 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 SLC35F5Q8WV83 523 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 SLC4A5Q9BY07 1137 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 DNAJC8O75937 253 aaPredicted RBP20.93■□□□□ 0.94
VPS53-201ENST00000291074 CCDC130P13994 396 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 SDC4P31431 198 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 GTF2A2P52657 109 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 ATXN1P54253 815 aaKnown RBP20.93■□□□□ 0.94
VPS53-201ENST00000291074 SLC6A3Q01959 620 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 TFDP2Q14188 446 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 SOWAHAQ2M3V2 549 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PALM2Q8IXS6 379 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PLD5Q8N7P1 536 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 MAGEB5Q9BZ81 275 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PCDH18Q9HCL0 1135 aa20.93■□□□□ 0.94
VPS53-201ENST00000291074 PDCD11Q14690 1871 aaKnown RBP20.93■□□□□ 0.94
VPS53-201ENST00000291074 AVILO75366 819 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 PDGFRBP09619 1106 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 SMIM10L2AP0DMW4 78 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 SMIM10L2BP0DMW5 78 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 PHBP35232 272 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 RNASELQ05823 741 aaKnown RBP20.92■□□□□ 0.94
VPS53-201ENST00000291074 PPP6R3Q5H9R7 873 aaPredicted RBP20.92■□□□□ 0.94
VPS53-201ENST00000291074 FAXCQ5TGI0 409 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 ACSS3Q9H6R3 686 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 PLEKHA5Q9HAU0 1116 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 KRT4P19013 534 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 ADORA2BP29275 332 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 RDXP35241 583 aaKnown RBP20.92■□□□□ 0.94
VPS53-201ENST00000291074 ELK3P41970 407 aa20.92■□□□□ 0.94
VPS53-201ENST00000291074 MGAT5Q09328 741 aa20.92■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms