RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 MAP2K7O14733 419 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 TADA2AO75478 443 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 HSPA6P17066 643 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 RPL21P46778 160 aaKnown RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 AARSP49588 968 aaKnown RBP eCLIP17.27■□□□□ 0.36
USP4-201ENST00000265560 CDH6P55285 790 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 SLC8A3P57103 927 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 HADHQ16836 314 aaKnown RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 DCLRE1AQ6PJP8 1040 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 CYP4V2Q6ZWL3 525 aaPredicted RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 METTL23Q86XA0 190 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 SIX6OS1Q8N1H7 587 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 TMEM86AQ8N2M4 240 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 URGCPQ8TCY9 931 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 SEPT8Q92599 483 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 EDEM1Q92611 657 aa17.27■□□□□ 0.36
USP4-201ENST00000265560 FAM124BQ9H5Z6 455 aaPredicted RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 PRDM5Q9NQX1 630 aaPredicted RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 DNAJC17Q9NVM6 304 aaKnown RBP17.27■□□□□ 0.36
USP4-201ENST00000265560 C3orf70A6NLC5 250 aaPredicted RBP17.27■□□□□ 0.35
USP4-201ENST00000265560 XPO1O14980 1071 aaKnown RBP17.27■□□□□ 0.35
USP4-201ENST00000265560 PRPSAP2O60256 369 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 CST8O60676 142 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 TUBBP07437 444 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 ZSCAN5DPP0CG00 497 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 SETSIPP0DME0 302 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 KDELR1P24390 212 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 CYP2F1P24903 491 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 HDAC4P56524 1084 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 PPARDQ03181 441 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 KRT17Q04695 432 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 ADCY1Q08828 1119 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 NPNTQ6UXI9 565 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 FAM131BQ86XD5 332 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 SCAMP5Q8TAC9 235 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 GPR152Q8TDT2 470 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 FNIP1Q8TF40 1166 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 GPR62Q9BZJ7 368 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 NRDE2Q9H7Z3 1164 aa17.27■□□□□ 0.35
USP4-201ENST00000265560 MRPL42Q9Y6G3 142 aaKnown RBP17.27■□□□□ 0.35
USP4-201ENST00000265560 hCG_1818297A0A087WSY0 165 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 YJEFN3A6XGL0 299 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 TBKBP1A7MCY6 615 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 DCDC2CA8MYV0 355 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 E7ENQ6 273 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 H3BQF6 201 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 YWHAHQ04917 246 aaPredicted RBP17.26■□□□□ 0.35
USP4-201ENST00000265560 NME3Q13232 169 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 TFDP3Q5H9I0 405 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 TBCBQ99426 244 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 TMEM161AQ9NX61 479 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 NAALADL1Q9UQQ1 740 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 ITGB8P26012 769 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 EPHB4P54760 987 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 DSC1Q08554 894 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 FBXO25Q8TCJ0 367 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 PWWP2AQ96N64 755 aa17.26■□□□□ 0.35
USP4-201ENST00000265560 LBX1P52954 281 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 SLC39A12Q504Y0 691 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 FAM171A1Q5VUB5 890 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 GSTA5Q7RTV2 222 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 PYROXD2Q8N2H3 581 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 RBM41Q96IZ5 413 aaKnown RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 FTHL17Q9BXU8 183 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 ASIC3Q9UHC3 531 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 NUDT5Q9UKK9 219 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 CDH9Q9ULB4 789 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 SOAT2O75908 522 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 ECEL1O95672 775 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 PCSK1P29120 753 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 GSCP56915 257 aaPredicted RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 DUPD1Q68J44 220 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 RFX6Q8HWS3 928 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 CCDC185Q8N715 623 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 STK32AQ8WU08 396 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 SUSD3Q96L08 255 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 CASD1Q96PB1 797 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 TMEM121Q9BTD3 319 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 LRRC19Q9H756 370 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 TMEM39AQ9NV64 488 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 ABI2Q9NYB9 513 aaPredicted RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 PCYOX1Q9UHG3 505 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 HPCAL4Q9UM19 191 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 ZNF148Q9UQR1 794 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 ZNF638Q14966 1978 aaKnown RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 M0QZQ0 153 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 KRT7P08729 469 aa17.25■□□□□ 0.35
USP4-201ENST00000265560 INTS6LQ5JSJ4 861 aaKnown RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 UBAP2Q5T6F2 1119 aaKnown RBP17.25■□□□□ 0.35
USP4-201ENST00000265560 PITPNM1O00562 1244 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 IFNB1P01574 187 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 MRPS5P82675 430 aaKnown RBP17.24■□□□□ 0.35
USP4-201ENST00000265560 CYP1B1Q16678 543 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 LRRC38Q5VT99 294 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 SLC26A9Q7LBE3 791 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 SCN4BQ8IWT1 228 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 TTC9BQ8N6N2 239 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 HSFY1Q96LI6 401 aa17.24■□□□□ 0.35
USP4-201ENST00000265560 SNRNP25Q9BV90 132 aaKnown RBP17.24■□□□□ 0.35
USP4-201ENST00000265560 OGFRQ9NZT2 677 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms