RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CCDC130P13994 396 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 SCNN1AP37088 669 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 ACADSBP45954 432 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 CTCFP49711 727 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 MRPS6P82932 125 aaKnown RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 SOX4Q06945 474 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 SREBF2Q12772 1141 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 MMRN1Q13201 1228 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 DPYSL3Q14195 570 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 CCDC38Q502W7 563 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 CYP4F22Q6NT55 531 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 MICALCLQ6ZW33 695 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 CENPUQ71F23 418 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 RSPH3Q86UC2 560 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 EXOC3L1Q86VI1 746 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM228AQ86W67 206 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 PPIL6Q8IXY8 311 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 SPATA18Q8TC71 538 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 PRCCQ92733 491 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 P3H4Q92791 437 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 ARHGEF2Q92974 986 aaKnown RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 TNIP3Q96KP6 325 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 TBCBQ99426 244 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 LPIN3Q9BQK8 851 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 MTG1Q9BT17 334 aaPredicted RBP13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 GOLGA2P5Q9HBQ8 144 aa13.52□□□□□ -0.25
SPTLC1-201ENST00000262554 HCRTO43612 131 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 CDH16O75309 829 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 LMO2P25791 158 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 GDF10P55107 478 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 LILRA4P59901 499 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 CRHR2Q13324 411 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 RAB6CQ53S08 254 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 GNASQ5JWF2 1037 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 LIMS2Q7Z4I7 341 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 VSIG1Q86XK7 387 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 ADGRF2Q8IZF7 708 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 TOP6BLQ8N6T0 577 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 KHSRPQ92945 711 aaKnown RBP eCLIP13.51□□□□□ -0.252e-7■□□□□ 9.9
SPTLC1-201ENST00000262554 RAB6CQ9H0N0 254 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 INTS9Q9NV88 658 aaKnown RBP13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 TRPV2Q9Y5S1 764 aa13.51□□□□□ -0.25
SPTLC1-201ENST00000262554 MYADML2A6NDP7 307 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SMAPO00193 183 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 GABBR2O75899 941 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 RBP3P10745 1247 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 WARSP23381 471 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 LRPAP1P30533 357 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 STIP1P31948 543 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 RPL22P35268 128 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 PTPN9P43378 593 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 GJA9P57773 515 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ROR1Q01973 937 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 NOMO1Q15155 1222 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 DARS2Q6PI48 645 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SLC26A9Q7LBE3 791 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ARCQ7LC44 396 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 UNC45BQ8IWX7 931 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 HACE1Q8IYU2 909 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 RIBC1Q8N443 379 aaPredicted RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ARRDC4Q8NCT1 418 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 TRPV1Q8NER1 839 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 RNF157Q96PX1 679 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 B3GNT5Q9BYG0 378 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 PHACTR1Q9C0D0 580 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 C10orf88Q9H8K7 445 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 LGALS13Q9UHV8 139 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 CDY2AQ9Y6F7 541 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SCN10AQ9Y5Y9 1956 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 MDM4O15151 490 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ALOX15BO15296 676 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 LCP1P13796 627 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 RPL34P49207 117 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ARL4CP56559 192 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SLC8A3P57103 927 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 PDIA2Q13087 525 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 HIF1AQ16665 826 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ZNF618Q5T7W0 954 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 MFSD14CQ5VZR4 134 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ZBED8Q8IZ13 594 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM71DQ8N9W8 422 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SLC2A14Q8TDB8 520 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 ATXN2LQ8WWM7 1075 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 CPT1BQ92523 772 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 CHMP6Q96FZ7 201 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 HSFY1Q96LI6 401 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SPC25Q9HBM1 224 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 SLC38A7Q9NVC3 462 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 CTNNAL1Q9UBT7 734 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 GTF2IRD1Q9UHL9 959 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM169AQ9Y6X4 670 aa13.5□□□□□ -0.25
SPTLC1-201ENST00000262554 EXOC1LA0A1B0GW35 172 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 H7C0C1 242 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 PTGESO14684 152 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 APOL1O14791 398 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 FAM163BP0C2L3 166 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 CYBAP13498 195 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 TGM2P21980 687 aa13.49□□□□□ -0.25
SPTLC1-201ENST00000262554 ATP5OP48047 213 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms