RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 LRCH1Q9Y2L9 728 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TTLL3Q9Y4R7 772 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 UBIAD1Q9Y5Z9 338 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 ADAMTSL1Q8N6G6 1762 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 PRPF4O43172 522 aaKnown RBP eCLIP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 C4BPAP04003 597 aaKnown RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 C6orf222P0C671 652 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CCND2P30279 289 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 MIPP30301 263 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 GTF2A2P52657 109 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 PTPN20Q4JDL3 420 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CDCA2Q69YH5 1023 aaPredicted RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 TAS1R3Q7RTX0 852 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 RNF217Q8TC41 542 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SLCO2A1Q92959 643 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 SHOC2Q9UQ13 582 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 MTO1Q9Y2Z2 717 aaKnown RBP12.47□□□□□ -0.41
USHBP1-201ENST00000252597 COQ4Q9Y3A0 265 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 ACTL7BQ9Y614 415 aa12.47□□□□□ -0.41
USHBP1-201ENST00000252597 CDK5RAP2Q96SN8 1893 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 A0A0B4J269 797 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 DCAF8L1A6NGE4 600 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 PDGFRAP16234 1089 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.46□□□□□ -0.41
USHBP1-201ENST00000252597 RALGPS1Q5JS13 557 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 TRMT10BQ6PF06 316 aaKnown RBP12.46□□□□□ -0.41
USHBP1-201ENST00000252597 KBTBD2Q8IY47 623 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 PPP1R13LQ8WUF5 828 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 FAM151AQ8WW52 585 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 AGAP3Q96P47 875 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 HAPLN2Q9GZV7 340 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 LRRC42Q9Y546 428 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 ZNF536O15090 1300 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 LRRC37AA6NMS7 1700 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 LTBP1Q14766 1721 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 ATRNL1Q5VV63 1379 aa12.46□□□□□ -0.41
USHBP1-201ENST00000252597 GOLGA8QA0A0J9YX86 632 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 GOLGA8OA6NCC3 632 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 GOLGA8NF8WBI6 632 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 PRPSAP2O60256 369 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 LRCH4O75427 683 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 LMNAP02545 664 aaKnown RBP12.46□□□□□ -0.42
USHBP1-201ENST00000252597 POLR2BP30876 1174 aaKnown RBP12.46□□□□□ -0.42
USHBP1-201ENST00000252597 SFNP31947 248 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 GRIA1P42261 906 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 DPYSL3Q14195 570 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 SULF1Q8IWU6 871 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 FAM49BQ9NUQ9 324 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 PPM1HQ9ULR3 514 aa12.46□□□□□ -0.42
USHBP1-201ENST00000252597 ACO1P21399 889 aaKnown RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 RBL1P28749 1068 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 BCAR1P56945 870 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CUL3Q13618 768 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 AMHR2Q16671 573 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 NXNQ6DKJ4 435 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 TRIM72Q6ZMU5 477 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 C12orf56Q8IXR9 622 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF184Q99676 751 aaPredicted RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ACSS3Q9H6R3 686 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF302Q9NR11 478 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ANKEF1Q9NU02 776 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ZNRF3Q9ULT6 936 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 INPP5FQ9Y2H2 1132 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 PROCP04070 461 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 C1QBPQ07021 282 aaKnown RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CCDC15Q0P6D6 951 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 FSTL1Q12841 308 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 PIGHQ14442 188 aaPredicted RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ZC3H12AQ5D1E8 599 aaKnown RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF677Q86XU0 584 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 KIAA0319LQ8IZA0 1049 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 BANPQ8N9N5 519 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 PRPF31Q8WWY3 499 aaKnown RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CPXM1Q96SM3 734 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 MAGEB5Q9BZ81 275 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ANGPTL2Q9UKU9 493 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 DNAJC16Q9Y2G8 782 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 ABHD2P08910 425 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CHRM1P11229 460 aaPredicted RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 KDELR1P24390 212 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 TBXAS1P24557 533 aaPredicted RBP12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CNTN2Q02246 1040 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 STX3Q13277 289 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 EFHC2Q5JST6 749 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CCNYQ8ND76 341 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 TUBGCP5Q96RT8 1024 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 CLIC5Q9NZA1 410 aa12.45□□□□□ -0.42
USHBP1-201ENST00000252597 E9PBE3 544 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 KLHL41O60662 606 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 TCEA3O75764 348 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 KRT7P08729 469 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 GARTP22102 1010 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 NUMBP49757 651 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 AP2B1P63010 937 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 OASLQ15646 514 aaKnown RBP12.44□□□□□ -0.42
USHBP1-201ENST00000252597 ZNF568Q3ZCX4 644 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 LGSNQ5TDP6 509 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 GALNT4Q8N4A0 578 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 APOPT1Q96IL0 206 aa12.44□□□□□ -0.42
USHBP1-201ENST00000252597 USP18Q9UMW8 372 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms