RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CCDC149Q6ZUS6 474 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SMIM5Q71RC9 77 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 SLC5A5Q92911 643 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TUBGCP3Q96CW5 907 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 CNBD2Q96M20 576 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 TBCBQ99426 244 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 RANBP17Q9H2T7 1088 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 RAB6BQ9NRW1 208 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 RAD18Q9NS91 495 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 GPRC5DQ9NZD1 345 aa13.22□□□□□ -0.29
USP40-201ENST00000251722 AFF4Q9UHB7 1163 aaKnown RBP13.22□□□□□ -0.29
USP40-201ENST00000251722 A0A087WZ62 844 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 DDTLA6NHG4 134 aaPredicted RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 OLR1P78380 273 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 ZNF200P98182 395 aaPredicted RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 LAMTOR4Q0VGL1 99 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 ZC2HC1CQ53FD0 456 aaPredicted RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 FBXO47Q5MNV8 452 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 LZTR1Q8N653 840 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 CMTM5Q96DZ9 223 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 FBXO28Q9NVF7 368 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 PKD2L2Q9NZM6 624 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 XPO7Q9UIA9 1087 aaKnown RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 SLIT3O75094 1523 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 ZNF839A8K0R7 811 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 SYNCRIPO60506 623 aaKnown RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 CLASP2O75122 1294 aaKnown RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 DNAJB2P25686 324 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 PTGER2P43116 358 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 PRMT2P55345 433 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 TGM3Q08188 693 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 PHKG1Q16816 387 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 ZNF284Q2VY69 593 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 FAM117BQ6P1L5 589 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 ZNF467Q7Z7K2 595 aaPredicted RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 C1orf54Q8WWF1 131 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 TMEM117Q9H0C3 514 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 DDX47Q9H0S4 455 aaKnown RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 COG4Q9H9E3 785 aa13.21□□□□□ -0.29
USP40-201ENST00000251722 METTL5Q9NRN9 209 aaKnown RBP13.21□□□□□ -0.29
USP40-201ENST00000251722 A0A0G2JND7 137 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 CCT8L1PA6NM43 557 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 ASS1P00966 412 aaKnown RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 ADORA2AP29274 412 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 IKBKEQ14164 716 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 FSCN1Q16658 493 aaKnown RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 PABPC1LQ4VXU2 614 aaKnown RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 E4F1Q66K89 784 aaPredicted RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 DDIASQ8IXT1 998 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 NFASCO94856 1347 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 DYRK3O43781 588 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 PLA2G6O60733 806 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 KLRK1P26718 216 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 MAPK1P28482 360 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 CYP24A1Q07973 514 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 RARS2Q5T160 578 aaKnown RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 ELMO2Q96JJ3 720 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 ADGRE3Q9BY15 652 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 UBE2OQ9C0C9 1292 aaKnown RBP13.21□□□□□ -0.3
USP40-201ENST00000251722 ELOVL4Q9GZR5 314 aa13.21□□□□□ -0.3
USP40-201ENST00000251722 A0A0A6YYK5 440 aaPredicted RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 SPDYE5A6NIY4 337 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ADCY6O43306 1168 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 CRTAMO95727 393 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 TP53BP2Q13625 1128 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 USP10Q14694 798 aaKnown RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 SPDYE7PQ495Y7 208 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 TTC39BQ5VTQ0 682 aaPredicted RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 RETSATQ6NUM9 610 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.2□□□□□ -0.3
USP40-201ENST00000251722 STX19Q8N4C7 294 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 SEC16BQ96JE7 1060 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 RPRD1AQ96P16 312 aaPredicted RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 TMEM134Q9H6X4 195 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 CHST12Q9NRB3 414 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 LATS2Q9NRM7 1088 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 DDIT4Q9NX09 232 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 CIDEBQ9UHD4 219 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 C2CD2Q9Y426 696 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ARHGEF28Q8N1W1 1705 aaKnown RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 NRCAMQ92823 1304 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 ATP6V1G2O95670 118 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 IL10P22301 178 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 INPP5AQ14642 412 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 NCAPHQ15003 741 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 TMEM110Q86TL2 294 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 SPATA4Q8NEY3 305 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 SPATA18Q8TC71 538 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 CYFIP2Q96F07 1278 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 RUSC1Q9BVN2 902 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 TBC1D13Q9NVG8 400 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 RABGEF1Q9UJ41 708 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 TTLL13PA6NNM8 815 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 KPNA4O00629 521 aaPredicted RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 CNTFP26441 200 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 LSP1P33241 339 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 NUP107P57740 925 aa13.2□□□□□ -0.3
USP40-201ENST00000251722 SESN2P58004 480 aaPredicted RBP13.2□□□□□ -0.3
USP40-201ENST00000251722 DDX42Q86XP3 938 aaKnown RBP eCLIP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms