RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP116YMR047C URA2P07259 2214 aaKnown RBP3.7□□□□□ -1.82
NUP116YMR047C RPL16BP26785 198 aaKnown RBP3.7□□□□□ -1.82
NUP116YMR047C YKR045CP36138 183 aa3.7□□□□□ -1.82
NUP116YMR047C YFR035CP43608 114 aa3.7□□□□□ -1.82
NUP116YMR047C YMR007WQ03675 126 aa3.7□□□□□ -1.82
NUP116YMR047C PEX17P40155 199 aa3.7□□□□□ -1.82
NUP116YMR047C YPI1P43587 155 aa3.7□□□□□ -1.82
NUP116YMR047C YOL118CQ08259 102 aa3.7□□□□□ -1.82
NUP116YMR047C HUG1Q6Q5K6 68 aa3.7□□□□□ -1.82
NUP116YMR047C YHR212W-AP0CX91 67 aa3.69□□□□□ -1.82
NUP116YMR047C DDR48P18899 430 aaKnown RBP3.69□□□□□ -1.82
NUP116YMR047C YDR274CP87283 123 aa3.69□□□□□ -1.82
NUP116YMR047C COX12Q01519 83 aa3.69□□□□□ -1.82
NUP116YMR047C YLR122CQ12312 125 aa3.69□□□□□ -1.82
NUP116YMR047C RPS22BQ3E7Y3 130 aaKnown RBP3.69□□□□□ -1.82
NUP116YMR047C PFY1P07274 126 aa3.69□□□□□ -1.82
NUP116YMR047C YDL022C-AP0C5L6 82 aa3.69□□□□□ -1.82
NUP116YMR047C HSP12P22943 109 aaKnown RBP3.69□□□□□ -1.82
NUP116YMR047C YEL045CP32616 141 aa3.69□□□□□ -1.82
NUP116YMR047C YGR050CP53231 118 aa3.69□□□□□ -1.82
NUP116YMR047C TSC3Q3E790 80 aa3.69□□□□□ -1.82
NUP116YMR047C MDN1Q12019 4910 aaKnown RBP3.68□□□□□ -1.82
NUP116YMR047C YMR295CQ03559 197 aa3.68□□□□□ -1.82
NUP116YMR047C SIM1P40472 476 aa3.67□□□□□ -1.82
NUP116YMR047C YGL088WP53151 121 aa3.67□□□□□ -1.82
NUP116YMR047C TIM22Q12328 207 aa3.67□□□□□ -1.82
NUP116YMR047C APS1P35181 156 aa3.67□□□□□ -1.82
NUP116YMR047C TDA2P40045 126 aa3.67□□□□□ -1.82
NUP116YMR047C VTC1P40046 129 aaRIP-Chip data3.67□□□□□ -1.82not detected
NUP116YMR047C AUA1P32450 94 aa3.67□□□□□ -1.82
NUP116YMR047C MRPL38P35996 138 aaPredicted RBP3.67□□□□□ -1.82
NUP116YMR047C SAP30P38429 201 aa3.67□□□□□ -1.82
NUP116YMR047C YNR077CP53758 84 aa3.67□□□□□ -1.82
NUP116YMR047C IRC23Q08416 157 aa3.67□□□□□ -1.82
NUP116YMR047C YPR053CQ6Q5F3 151 aa3.67□□□□□ -1.82
NUP116YMR047C EDC1P53080 175 aaPredicted RBP3.66□□□□□ -1.82
NUP116YMR047C ERI1P62651 68 aaKnown RBP3.66□□□□□ -1.82
NUP116YMR047C YPS5P53057 165 aa3.65□□□□□ -1.82
NUP116YMR047C YMR181CQ03231 154 aa3.65□□□□□ -1.82
NUP116YMR047C YBL071CP38185 102 aa3.65□□□□□ -1.83
NUP116YMR047C PET8P38921 284 aa3.65□□□□□ -1.83
NUP116YMR047C YML100W-AQ8TGT0 57 aa3.65□□□□□ -1.83
NUP116YMR047C YSY6P38374 65 aa3.65□□□□□ -1.83
NUP116YMR047C PBA1Q05778 276 aa3.65□□□□□ -1.83
NUP116YMR047C YDR246W-AQ3E763 66 aa3.65□□□□□ -1.83
NUP116YMR047C YOR381W-AQ3E804 55 aa3.65□□□□□ -1.83
NUP116YMR047C HTL1Q9URQ5 78 aa3.65□□□□□ -1.83
NUP116YMR047C POR2P40478 281 aa3.64□□□□□ -1.83
NUP116YMR047C RPL26AP05743 127 aaKnown RBP3.64□□□□□ -1.83
NUP116YMR047C RPS22AP0C0W1 130 aaKnown RBP3.64□□□□□ -1.83
NUP116YMR047C RRT1P38192 103 aa3.63□□□□□ -1.83
NUP116YMR047C YHR173CP38864 112 aa3.63□□□□□ -1.83
NUP116YMR047C YER135CP40082 130 aa3.63□□□□□ -1.83
NUP116YMR047C YGR269WP40326 108 aa3.63□□□□□ -1.83
NUP116YMR047C YJL027CP47063 138 aaPredicted RBP3.63□□□□□ -1.83
NUP116YMR047C YGR018CP53211 109 aa3.63□□□□□ -1.83
NUP116YMR047C RSM18P40033 138 aa3.62□□□□□ -1.83
NUP116YMR047C WWM1P43582 211 aaKnown RBP3.62□□□□□ -1.83
NUP116YMR047C SPI1P40092 148 aa3.61□□□□□ -1.83
NUP116YMR047C PPT2Q12036 173 aa3.61□□□□□ -1.83
NUP116YMR047C YNL146C-AQ3E7Z1 64 aa3.61□□□□□ -1.83
NUP116YMR047C YCR022CP25620 114 aa3.61□□□□□ -1.83
NUP116YMR047C YGL193CP53097 103 aa3.61□□□□□ -1.83
NUP116YMR047C CRC1Q12289 327 aa3.61□□□□□ -1.83
NUP116YMR047C AGA1P32323 725 aa3.6□□□□□ -1.83
NUP116YMR047C AIM19P40502 157 aa3.6□□□□□ -1.83
NUP116YMR047C IMP2P46972 177 aa3.6□□□□□ -1.83
NUP116YMR047C YLR285C-AQ3E771 56 aa3.6□□□□□ -1.83
NUP116YMR047C YFR032C-BQ8TGU2 87 aa3.59□□□□□ -1.83
NUP116YMR047C QCR9P22289 66 aa3.59□□□□□ -1.83
NUP116YMR047C TOM7P53507 60 aa3.59□□□□□ -1.83
NUP116YMR047C YNL190WP53872 204 aa3.59□□□□□ -1.83
NUP116YMR047C CCW12Q12127 133 aa3.59□□□□□ -1.83
NUP116YMR047C YKR032WP36127 104 aa3.59□□□□□ -1.84
NUP116YMR047C AIM4P38305 123 aaPredicted RBP3.59□□□□□ -1.84
NUP116YMR047C HUR1P45820 110 aa3.58□□□□□ -1.84
NUP116YMR047C PRM7Q12459 698 aa3.58□□□□□ -1.84
NUP116YMR047C YGR121W-AQ3E816 71 aa3.58□□□□□ -1.84
NUP116YMR047C HHF1P02309 103 aaKnown RBP3.58□□□□□ -1.84
NUP116YMR047C TAR1Q8TGM6 124 aa3.58□□□□□ -1.84
NUP116YMR047C YLR156WP0CE96 114 aa3.57□□□□□ -1.84
NUP116YMR047C YLR159WP0CE97 114 aa3.57□□□□□ -1.84
NUP116YMR047C YLR161WP0CE98 114 aa3.57□□□□□ -1.84
NUP116YMR047C YPR013CQ12145 317 aa3.57□□□□□ -1.84
NUP116YMR047C RPR2P40571 144 aa3.57□□□□□ -1.84
NUP116YMR047C RPL26BP53221 127 aaKnown RBP3.57□□□□□ -1.84
NUP116YMR047C FYV12Q08559 129 aa3.56□□□□□ -1.84
NUP116YMR047C FYV5P25585 152 aa3.56□□□□□ -1.84
NUP116YMR047C RPL32P38061 130 aaKnown RBP3.56□□□□□ -1.84
NUP116YMR047C VAM10Q08474 114 aa3.56□□□□□ -1.84
NUP116YMR047C ATP20Q12233 115 aa3.55□□□□□ -1.84
NUP116YMR047C RPS11AP0CX47 156 aaKnown RBP3.55□□□□□ -1.84
NUP116YMR047C RPS11BP0CX48 156 aaKnown RBP3.55□□□□□ -1.84
NUP116YMR047C HOT13P36078 116 aa3.55□□□□□ -1.84
NUP116YMR047C MRPS8Q03799 155 aa3.55□□□□□ -1.84
NUP116YMR047C YMR122CQ03879 124 aa3.54□□□□□ -1.84
NUP116YMR047C HMRA2P0CY13 119 aa3.54□□□□□ -1.84
NUP116YMR047C YMR244WQ04018 355 aa3.54□□□□□ -1.84
NUP116YMR047C SPC1P46965 94 aa3.54□□□□□ -1.84
NUP116YMR047C YLR162WQ06235 118 aa3.54□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 32.8 ms