RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeastyeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP9YER098W MRPS12P53732 153 aa3.88□□□□□ -1.79
UBP9YER098W SHH4Q06236 168 aa3.88□□□□□ -1.79
UBP9YER098W YKR045CP36138 183 aa3.88□□□□□ -1.79
UBP9YER098W MPC2P38857 129 aa3.88□□□□□ -1.79
UBP9YER098W SFT1P43682 97 aa3.88□□□□□ -1.79
UBP9YER098W HUR1P45820 110 aa3.88□□□□□ -1.79
UBP9YER098W PIR5P46999 287 aa3.88□□□□□ -1.79
UBP9YER098W YAR029WP39549 74 aa3.87□□□□□ -1.79
UBP9YER098W YER084WP40057 128 aa3.87□□□□□ -1.79
UBP9YER098W YFL019CP43576 117 aa3.87□□□□□ -1.79
UBP9YER098W YOR034C-AQ3E735 80 aa3.87□□□□□ -1.79
UBP9YER098W YLR285C-AQ3E771 56 aa3.87□□□□□ -1.79
UBP9YER098W YIL046W-AQ3E7Z4 54 aa3.87□□□□□ -1.79
UBP9YER098W TOS8P53147 276 aa3.87□□□□□ -1.79
UBP9YER098W YMR230W-AQ3E7B5 62 aa3.87□□□□□ -1.79
UBP9YER098W MRPL39P36533 70 aa3.86□□□□□ -1.79
UBP9YER098W RRT1P38192 103 aa3.86□□□□□ -1.79
UBP9YER098W DCV1P43595 202 aa3.86□□□□□ -1.79
UBP9YER098W YML122CQ03207 126 aa3.86□□□□□ -1.79
UBP9YER098W RRT15Q3E811 62 aa3.86□□□□□ -1.79
UBP9YER098W YGR025WP53216 100 aa3.86□□□□□ -1.79
UBP9YER098W YLR412C-AQ3E742 68 aa3.86□□□□□ -1.79
UBP9YER098W YGR219WP53307 113 aa3.85□□□□□ -1.79
UBP9YER098W HAL1Q01766 294 aa3.85□□□□□ -1.79
UBP9YER098W YJL027CP47063 138 aaPredicted RBP3.84□□□□□ -1.79
UBP9YER098W YOL160WQ08321 113 aa3.84□□□□□ -1.79
UBP9YER098W MSA2P36157 363 aa3.84□□□□□ -1.79
UBP9YER098W YGL260WP53056 76 aa3.84□□□□□ -1.79
UBP9YER098W YOR268CQ08734 132 aa3.84□□□□□ -1.79
UBP9YER098W YDR246W-AQ3E763 66 aa3.84□□□□□ -1.79
UBP9YER098W YLR156WP0CE96 114 aa3.83□□□□□ -1.8
UBP9YER098W YLR159WP0CE97 114 aa3.83□□□□□ -1.8
UBP9YER098W YLR161WP0CE98 114 aa3.83□□□□□ -1.8
UBP9YER098W MMS2P53152 137 aa3.83□□□□□ -1.8
UBP9YER098W YOL085CQ99345 113 aa3.83□□□□□ -1.8
UBP9YER098W UBC4P15731 148 aa3.83□□□□□ -1.8
UBP9YER098W EDC1P53080 175 aaPredicted RBP3.83□□□□□ -1.8
UBP9YER098W YGL088WP53151 121 aa3.83□□□□□ -1.8
UBP9YER098W YGL034CP53186 121 aa3.83□□□□□ -1.8
UBP9YER098W YNL046WP53956 172 aa3.83□□□□□ -1.8
UBP9YER098W YMR105W-AQ8TGS8 64 aa3.83□□□□□ -1.8
UBP9YER098W RPL39P04650 51 aa3.82□□□□□ -1.8
UBP9YER098W YHR022CP38763 256 aa3.82□□□□□ -1.8
UBP9YER098W CCW14O13547 238 aa3.82□□□□□ -1.8
UBP9YER098W SHU1P38751 150 aa3.82□□□□□ -1.8
UBP9YER098W PEX17P40155 199 aa3.82□□□□□ -1.8
UBP9YER098W YJR146WP47174 117 aa3.82□□□□□ -1.8
UBP9YER098W ERI1P62651 68 aaKnown RBP3.82□□□□□ -1.8
UBP9YER098W YNL277W-AQ3E7Z0 62 aa3.82□□□□□ -1.8
UBP9YER098W TDA8Q6B2U8 126 aa3.82□□□□□ -1.8
UBP9YER098W AIM4P38305 123 aaPredicted RBP3.81□□□□□ -1.8
UBP9YER098W YGR164WP53291 111 aa3.81□□□□□ -1.8
UBP9YER098W EDC2P40023 145 aaPredicted RBP3.81□□□□□ -1.8
UBP9YER098W SIP18P50263 79 aa3.81□□□□□ -1.8
UBP9YER098W ICY1Q04329 127 aa3.81□□□□□ -1.8
UBP9YER098W YBL008W-AQ3E821 79 aa3.81□□□□□ -1.8
UBP9YER098W IRC21Q04772 201 aa3.8□□□□□ -1.8
UBP9YER098W ECM19Q06011 112 aa3.8□□□□□ -1.8
UBP9YER098W ATP20Q12233 115 aa3.8□□□□□ -1.8
UBP9YER098W YAL067W-AQ8TGK6 75 aa3.8□□□□□ -1.8
UBP9YER098W CTR2P38865 189 aa3.79□□□□□ -1.8
UBP9YER098W ARC15P40518 154 aaRIP-Chip data3.79□□□□□ -1.8not detected
UBP9YER098W MIC10Q96VH5 97 aa3.78□□□□□ -1.8
UBP9YER098W MRPL38P35996 138 aaPredicted RBP3.78□□□□□ -1.8
UBP9YER098W YBL081WP38180 368 aaKnown RBP3.78□□□□□ -1.8
UBP9YER098W RGM1Q00453 211 aa3.78□□□□□ -1.8
UBP9YER098W YJR107C-AP0CT86 78 aa3.77□□□□□ -1.81
UBP9YER098W RPB9P27999 122 aa3.77□□□□□ -1.81
UBP9YER098W RPL38P49167 78 aaKnown RBP3.77□□□□□ -1.81
UBP9YER098W YBR200W-AQ3E755 54 aa3.77□□□□□ -1.81
UBP9YER098W YEL008WP40001 126 aa3.76□□□□□ -1.81
UBP9YER098W QCR8P08525 94 aa3.75□□□□□ -1.81
UBP9YER098W ICS3P47034 131 aa3.75□□□□□ -1.81
UBP9YER098W RSM19P53733 91 aaPredicted RBP3.75□□□□□ -1.81
UBP9YER098W NOP10Q6Q547 58 aaPredicted RBP3.75□□□□□ -1.81
UBP9YER098W HFA1P32874 2273 aa3.74□□□□□ -1.81
UBP9YER098W YMR295CQ03559 197 aa3.74□□□□□ -1.81
UBP9YER098W YOR381W-AQ3E804 55 aa3.74□□□□□ -1.81
UBP9YER098W RPL26AP05743 127 aaKnown RBP3.74□□□□□ -1.81
UBP9YER098W RPL26BP53221 127 aaKnown RBP3.74□□□□□ -1.81
UBP9YER098W YOR376W-AQ3E805 51 aa3.74□□□□□ -1.81
UBP9YER098W POR2P40478 281 aa3.73□□□□□ -1.81
UBP9YER098W YFR035CP43608 114 aa3.73□□□□□ -1.81
UBP9YER098W MPC3P53311 146 aa3.73□□□□□ -1.81
UBP9YER098W CSF1Q12150 2958 aa3.73□□□□□ -1.81
UBP9YER098W UTH1P36135 365 aa3.73□□□□□ -1.81
UBP9YER098W YOR032W-AQ8TGS1 66 aa3.73□□□□□ -1.81
UBP9YER098W YLR236CA0A023PZG4 107 aa3.72□□□□□ -1.81
UBP9YER098W RSM18P40033 138 aa3.72□□□□□ -1.81
UBP9YER098W YDR274CP87283 123 aa3.72□□□□□ -1.81
UBP9YER098W URA2P07259 2214 aaKnown RBP3.71□□□□□ -1.82
UBP9YER098W GAT4P40569 121 aa3.71□□□□□ -1.82
UBP9YER098W YGR121W-AQ3E816 71 aa3.71□□□□□ -1.82
UBP9YER098W RPS23AP0CX29 145 aaKnown RBP3.7□□□□□ -1.82
UBP9YER098W RPS23BP0CX30 145 aa3.7□□□□□ -1.82
UBP9YER098W ATP18P81450 59 aa3.7□□□□□ -1.82
UBP9YER098W YOR011W-AQ3E807 68 aa3.7□□□□□ -1.82
UBP9YER098W TAO3P40468 2376 aa3.7□□□□□ -1.82
UBP9YER098W YAL065CO13511 128 aa3.7□□□□□ -1.82
UBP9YER098W YHL005CP38752 130 aa3.7□□□□□ -1.82
Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms