RNA–Protein interactions for RNA: YDL112W

TRM3, Transcript of 2'-O-ribose methyltransferase, yeast

Gene TRM3, Length 4,311 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRM3	YDL112W	RPL18B	P0CX50	186 aa	Known RBP	0.98	□□□□□ -2.25
TRM3	YDL112W	SHU1	P38751	150 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	CWP2	P43497	92 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YIL014C-A	Q02598	104 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YOR268C	Q08734	132 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	FMP16	Q12497	93 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	RPL27B	P0C2H7	136 aa	Known RBP	0.98	□□□□□ -2.25
TRM3	YDL112W	SPT4	P32914	102 aa	Predicted RBP	0.98	□□□□□ -2.25
TRM3	YDL112W	NTF2	P33331	125 aa	Known RBP	0.98	□□□□□ -2.25
TRM3	YDL112W	ERV14	P53173	138 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	KSH1	Q8TGJ3	72 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YGL010W	P25338	174 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YBR209W	P38311	105 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	ATP16	Q12165	160 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	CMC2	Q3E7A4	109 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	Q0032	Q9ZZX7	96 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YKL070W	P36087	169 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	YOR020W-A	Q3E824	90 aa		0.98	□□□□□ -2.25
TRM3	YDL112W	ADH1	P00330	348 aa	Known RBP	0.97	□□□□□ -2.25
TRM3	YDL112W	YGL149W	P53116	101 aa		0.97	□□□□□ -2.25
TRM3	YDL112W	ABF2	Q02486	183 aa		0.97	□□□□□ -2.25
TRM3	YDL112W	PAM17	P36147	197 aa		0.97	□□□□□ -2.25
TRM3	YDL112W	YNL042W-B	Q3E7Z2	85 aa		0.97	□□□□□ -2.25
TRM3	YDL112W	SEC4	P07560	215 aa	Known RBP	0.97	□□□□□ -2.25
TRM3	YDL112W	PRE1	P22141	198 aa	Known RBP	0.97	□□□□□ -2.25
TRM3	YDL112W	RPL26A	P05743	127 aa	Known RBP	0.96	□□□□□ -2.26
TRM3	YDL112W	KRE1	P17260	313 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	GSP1	P32835	219 aa	Known RBP	0.96	□□□□□ -2.26
TRM3	YDL112W	YER085C	P40058	173 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	YGL088W	P53151	121 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	RPL26B	P53221	127 aa	Known RBP	0.96	□□□□□ -2.26
TRM3	YDL112W	MRPS12	P53732	153 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	YLR050C	Q12155	161 aa	Known RBP	0.96	□□□□□ -2.26
TRM3	YDL112W	MRPL24	P36525	258 aa	Predicted RBP	0.96	□□□□□ -2.26
TRM3	YDL112W	ATG8	P38182	117 aa	RIP-Chip data	0.96	□□□□□ -2.26	not detected
TRM3	YDL112W	SFT1	P43682	97 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	YLL006W-A	Q3E814	58 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	YPR014C	Q6B0W2	109 aa		0.96	□□□□□ -2.26
TRM3	YDL112W	VMA21	P41806	77 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	ARL3	Q02804	198 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	ICY1	Q04329	127 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	AIM11	P87275	137 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	SMD1	Q02260	146 aa	Predicted RBP	0.95	□□□□□ -2.26
TRM3	YDL112W	ATP15	P21306	62 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	COX10	P21592	462 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	YKL044W	P36092	106 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	YNL122C	P53921	115 aa	Predicted RBP	0.95	□□□□□ -2.26
TRM3	YDL112W	YAL063C-A	Q3E791	96 aa		0.95	□□□□□ -2.26
TRM3	YDL112W	GSP2	P32836	220 aa	Known RBP	0.94	□□□□□ -2.26
TRM3	YDL112W	DDR2	P89113	61 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YMR103C	Q04436	120 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YPL257W	Q08974	193 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YBR230W-A	Q3E762	66 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	KTI11	Q3E840	82 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YLR236C	A0A023PZG4	107 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	FYV4	P38783	130 aa	Predicted RBP	0.94	□□□□□ -2.26
TRM3	YDL112W	CGR1	P53188	120 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	CYT2	Q00873	224 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	ZEO1	Q08245	113 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	WIP1	Q2V2P8	89 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YHL018W	P38744	120 aa	Predicted RBP	0.94	□□□□□ -2.26
TRM3	YDL112W	YAL067W-A	Q8TGK6	75 aa		0.94	□□□□□ -2.26
TRM3	YDL112W	YKR041W	P36134	250 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	YEL067C	P39978	195 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	YML079W	Q03629	201 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	IGO2	Q9P305	131 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	YHL005C	P38752	130 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	GTT1	P40582	234 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	FYV5	P25585	152 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	NHP2	P32495	156 aa	Predicted RBP	0.93	□□□□□ -2.26
TRM3	YDL112W	POP3	P53833	195 aa	Predicted RBP	0.93	□□□□□ -2.26
TRM3	YDL112W	CNL1	Q06333	122 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	PAU17	Q12370	124 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	RGM1	Q00453	211 aa		0.93	□□□□□ -2.26
TRM3	YDL112W	SEC11	P15367	167 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	HPA2	Q06592	156 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	SCS22	Q6Q595	175 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	Q0017	Q9ZZX8	53 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	COX7	P10174	60 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	UGX2	P32772	223 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	IRC21	Q04772	201 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	MRPL11	P36521	249 aa	Predicted RBP	0.92	□□□□□ -2.26
TRM3	YDL112W	YJL127C-B	Q3E828	52 aa		0.92	□□□□□ -2.26
TRM3	YDL112W	YDL022C-A	P0C5L6	82 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	NSE4	P43124	402 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YOR072W	Q08486	104 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YPL261C	Q08976	102 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YOL097W-A	Q3E7Y9	61 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YPL073C	P40323	161 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	SHH4	Q06236	168 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YER134C	P40081	178 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	FYV12	Q08559	129 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	TDA8	Q6B2U8	126 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	ATP5	P09457	212 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	FUN14	P18411	198 aa		0.91	□□□□□ -2.26
TRM3	YDL112W	YNR077C	P53758	84 aa		0.9	□□□□□ -2.27
TRM3	YDL112W	COA6	Q3E846	104 aa		0.9	□□□□□ -2.27
TRM3	YDL112W	MSA2	P36157	363 aa		0.9	□□□□□ -2.27
TRM3	YDL112W	BSC4	P53841	131 aa		0.9	□□□□□ -2.27
TRM3	YDL112W	PAU23	Q07987	124 aa		0.9	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 27.3 ms