RNA–Protein interactions for RNA: YBR204C

LDH1, Transcript of Serine hydrolase, yeast

Gene LDH1, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LDH1	YBR204C	RPB11	P38902	120 aa		0.66	□□□□□ -2.3
LDH1	YBR204C	BLM10	P43583	2143 aa		0.65	□□□□□ -2.3
LDH1	YBR204C	VPS55	P47111	140 aa		0.65	□□□□□ -2.31
LDH1	YBR204C	RPS29B	P41058	56 aa	Known RBP	0.64	□□□□□ -2.31
LDH1	YBR204C	RPL22B	P56628	122 aa	Known RBP	0.64	□□□□□ -2.31
LDH1	YBR204C	YLR363W-A	Q3E747	85 aa		0.64	□□□□□ -2.31
LDH1	YBR204C	TY4B-H	P0C2J7	1802 aa		0.64	□□□□□ -2.31
LDH1	YBR204C	TY3B-I	Q7LHG5	1498 aa	Known RBP	0.63	□□□□□ -2.31
LDH1	YBR204C	LYS2	P07702	1392 aa		0.63	□□□□□ -2.31
LDH1	YBR204C	MRPS12	P53732	153 aa		0.63	□□□□□ -2.31
LDH1	YBR204C	FLO1	P32768	1537 aa		0.63	□□□□□ -2.31
LDH1	YBR204C	KRE5	P22023	1365 aa		0.62	□□□□□ -2.31
LDH1	YBR204C	YER187W	P40102	141 aa		0.62	□□□□□ -2.31
LDH1	YBR204C	SNN1	P48232	102 aa		0.62	□□□□□ -2.31
LDH1	YBR204C	YDR010C	Q12426	110 aa		0.62	□□□□□ -2.31
LDH1	YBR204C	HMRA2	P0CY13	119 aa		0.61	□□□□□ -2.31
LDH1	YBR204C	YCR099C	P25657	155 aa		0.61	□□□□□ -2.31
LDH1	YBR204C	YOR097C	Q12274	175 aa	Predicted RBP	0.61	□□□□□ -2.31
LDH1	YBR204C	MEC1	P38111	2368 aa		0.6	□□□□□ -2.31
LDH1	YBR204C	PAU24	P38155	120 aa		0.6	□□□□□ -2.31
LDH1	YBR204C	DAD1	Q12248	94 aa		0.6	□□□□□ -2.31
LDH1	YBR204C	YIR020C	P40575	100 aa		0.59	□□□□□ -2.31
LDH1	YBR204C	PMD1	P32634	1753 aa		0.59	□□□□□ -2.32
LDH1	YBR204C	PAU2	P32612	120 aa		0.58	□□□□□ -2.32
LDH1	YBR204C	YAR029W	P39549	74 aa		0.58	□□□□□ -2.32
LDH1	YBR204C	YHR173C	P38864	112 aa		0.57	□□□□□ -2.32
LDH1	YBR204C	YLR419W	Q06698	1435 aa	Known RBP	0.56	□□□□□ -2.32
LDH1	YBR204C	PAM16	P42949	149 aa		0.56	□□□□□ -2.32
LDH1	YBR204C	YOL164W-A	Q3E7A5	60 aa		0.56	□□□□□ -2.32
LDH1	YBR204C	BRR2	P32639	2163 aa	Known RBP	0.56	□□□□□ -2.32
LDH1	YBR204C	YLR042C	Q07990	161 aa		0.55	□□□□□ -2.32
LDH1	YBR204C	YDR524C-B	Q3E6R4	66 aa		0.55	□□□□□ -2.32
LDH1	YBR204C	YBR072C-A	Q3E794	53 aa		0.55	□□□□□ -2.32
LDH1	YBR204C	UTP10	P42945	1769 aa	Known RBP	0.55	□□□□□ -2.32
LDH1	YBR204C	APS2	Q00381	147 aa		0.54	□□□□□ -2.32
LDH1	YBR204C	ECM29	P38737	1868 aa		0.54	□□□□□ -2.32
LDH1	YBR204C	GTT1	P40582	234 aa		0.53	□□□□□ -2.32
LDH1	YBR204C	WIP1	Q2V2P8	89 aa		0.53	□□□□□ -2.32
LDH1	YBR204C	YLR365W	Q7LIF2	110 aa		0.53	□□□□□ -2.32
LDH1	YBR204C	HKR1	P41809	1802 aa		0.52	□□□□□ -2.33
LDH1	YBR204C	ADK1	P07170	222 aa	Known RBP	0.52	□□□□□ -2.33
LDH1	YBR204C	PAU19	P0CE85	124 aa		0.52	□□□□□ -2.33
LDH1	YBR204C	PAU3	P25610	124 aa		0.52	□□□□□ -2.33
LDH1	YBR204C	RTR2	Q12378	196 aa		0.51	□□□□□ -2.33
LDH1	YBR204C	RPO41	P13433	1351 aa	Known RBP	0.5	□□□□□ -2.33
LDH1	YBR204C	YIL046W-A	Q3E7Z4	54 aa		0.5	□□□□□ -2.33
LDH1	YBR204C	POL2	P21951	2222 aa	Known RBP	0.5	□□□□□ -2.33
LDH1	YBR204C	MYO1	P08964	1928 aa		0.49	□□□□□ -2.33
LDH1	YBR204C	YLR255C	O13574	117 aa		0.49	□□□□□ -2.33
LDH1	YBR204C	GCV3	P39726	170 aa	Predicted RBP	0.49	□□□□□ -2.33
LDH1	YBR204C	LSM6	Q06406	86 aa	Known RBP	0.49	□□□□□ -2.33
LDH1	YBR204C	YCL048W-A	Q2V2Q2	79 aa		0.49	□□□□□ -2.33
LDH1	YBR204C	YIL086C	P40503	102 aa		0.46	□□□□□ -2.34
LDH1	YBR204C	SHU1	P38751	150 aa		0.45	□□□□□ -2.34
LDH1	YBR204C	IMP2	P46972	177 aa		0.45	□□□□□ -2.34
LDH1	YBR204C	YOL118C	Q08259	102 aa		0.44	□□□□□ -2.34
LDH1	YBR204C	YIR021W-A	Q3E739	70 aa		0.43	□□□□□ -2.34
LDH1	YBR204C	RPA12	P32529	125 aa	Known RBP	0.42	□□□□□ -2.34
LDH1	YBR204C	YHR138C	P38841	114 aa	Predicted RBP	0.42	□□□□□ -2.34
LDH1	YBR204C	PAU15	P40585	124 aa		0.42	□□□□□ -2.34
LDH1	YBR204C	HUR1	P45820	110 aa		0.42	□□□□□ -2.34
LDH1	YBR204C	PAU16	P35994	123 aa		0.41	□□□□□ -2.34
LDH1	YBR204C	MOT1	P32333	1867 aa		0.41	□□□□□ -2.34
LDH1	YBR204C	CCW14	O13547	238 aa		0.4	□□□□□ -2.35
LDH1	YBR204C	BUD23	P25627	275 aa	Predicted RBP	0.4	□□□□□ -2.35
LDH1	YBR204C	VMA21	P41806	77 aa		0.4	□□□□□ -2.35
LDH1	YBR204C	YGR164W	P53291	111 aa		0.4	□□□□□ -2.35
LDH1	YBR204C	YPL038W-A	Q3E7B4	63 aa		0.38	□□□□□ -2.35
LDH1	YBR204C	MPC2	P38857	129 aa		0.37	□□□□□ -2.35
LDH1	YBR204C	YDR210W	Q03482	75 aa		0.37	□□□□□ -2.35
LDH1	YBR204C	COX19	Q3E731	98 aa		0.37	□□□□□ -2.35
LDH1	YBR204C	SWC7	Q06707	132 aa		0.36	□□□□□ -2.35
LDH1	YBR204C	YOR304C-A	O14468	76 aa		0.35	□□□□□ -2.35
LDH1	YBR204C	YER039C-A	P0CD97	72 aa		0.35	□□□□□ -2.35
LDH1	YBR204C	SRB6	P32570	121 aa		0.35	□□□□□ -2.35
LDH1	YBR204C	YNL190W	P53872	204 aa		0.34	□□□□□ -2.36
LDH1	YBR204C	YCR101C	P25607	182 aa		0.33	□□□□□ -2.36
LDH1	YBR204C	COX12	Q01519	83 aa		0.31	□□□□□ -2.36
LDH1	YBR204C	RPS11A	P0CX47	156 aa	Known RBP	0.3	□□□□□ -2.36
LDH1	YBR204C	RPS11B	P0CX48	156 aa	Known RBP	0.3	□□□□□ -2.36
LDH1	YBR204C	RUB1	Q03919	77 aa		0.3	□□□□□ -2.36
LDH1	YBR204C	Q0297	Q9ZZV8	51 aa		0.3	□□□□□ -2.36
LDH1	YBR204C	STT4	P37297	1900 aa		0.3	□□□□□ -2.36
LDH1	YBR204C	MRX7	P53869	86 aa		0.28	□□□□□ -2.36
LDH1	YBR204C	YOS1	Q3E834	85 aa		0.28	□□□□□ -2.36
LDH1	YBR204C	MIC10	Q96VH5	97 aa		0.28	□□□□□ -2.36
LDH1	YBR204C	GNA1	P43577	159 aa	Predicted RBP	0.26	□□□□□ -2.37
LDH1	YBR204C	YCR095W-A	Q3E787	52 aa		0.26	□□□□□ -2.37
LDH1	YBR204C	LHP1	P33399	275 aa	Known RBP	0.25	□□□□□ -2.37
LDH1	YBR204C	SNA2	P56508	79 aa		0.24	□□□□□ -2.37
LDH1	YBR204C	MRPL38	P35996	138 aa	Predicted RBP	0.23	□□□□□ -2.37
LDH1	YBR204C	ICY1	Q04329	127 aa		0.23	□□□□□ -2.37
LDH1	YBR204C	YMR103C	Q04436	120 aa		0.23	□□□□□ -2.37
LDH1	YBR204C	MLP1	Q02455	1875 aa	Known RBP	0.2	□□□□□ -2.38
LDH1	YBR204C	PAU6	P0CE90	120 aa		0.2	□□□□□ -2.38
LDH1	YBR204C	PAU18	P0CE91	120 aa		0.2	□□□□□ -2.38
LDH1	YBR204C	UBC4	P15731	148 aa		0.2	□□□□□ -2.38
LDH1	YBR204C	PAU5	P43575	122 aa		0.2	□□□□□ -2.38
LDH1	YBR204C	MRP17	P28778	131 aa		0.19	□□□□□ -2.38
LDH1	YBR204C	YMR090W	Q04304	227 aa	Known RBP	0.19	□□□□□ -2.38

Retrieved 100 of 5,963 RNA–protein pairs in 28.2 ms