RNA–Protein interactions for RNA: YBL058W

SHP1, Transcript of UBX (ubiquitin regulatory X) domain-containing protein, yeastyeast

Gene SHP1, Length 1,272 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHP1YBL058W GSP1P32835 219 aaKnown RBP3.52□□□□□ -1.85
SHP1YBL058W SHU1P38751 150 aa3.52□□□□□ -1.85
SHP1YBL058W YCR043CP25361 127 aa3.51□□□□□ -1.85
SHP1YBL058W EDC2P40023 145 aaPredicted RBP3.51□□□□□ -1.85
SHP1YBL058W YGL118CP53132 145 aa3.51□□□□□ -1.85
SHP1YBL058W HTL1Q9URQ5 78 aa3.51□□□□□ -1.85
SHP1YBL058W MBF1O14467 151 aaKnown RBP3.5□□□□□ -1.85
SHP1YBL058W GSP2P32836 220 aaKnown RBP3.5□□□□□ -1.85
SHP1YBL058W ATP16Q12165 160 aa3.5□□□□□ -1.85
SHP1YBL058W ADH1P00330 348 aaKnown RBP3.49□□□□□ -1.85
SHP1YBL058W SCM4P32564 187 aa3.49□□□□□ -1.85
SHP1YBL058W YJR085CP47131 105 aaKnown RBP3.49□□□□□ -1.85
SHP1YBL058W SPG1P50088 95 aa3.49□□□□□ -1.85
SHP1YBL058W AIM11P87275 137 aa3.49□□□□□ -1.85
SHP1YBL058W YKL023C-AQ2V2P3 75 aa3.49□□□□□ -1.85
SHP1YBL058W KSH1Q8TGJ3 72 aa3.49□□□□□ -1.85
SHP1YBL058W QCR8P08525 94 aa3.48□□□□□ -1.85
SHP1YBL058W RPL27BP0C2H7 136 aaKnown RBP3.48□□□□□ -1.85
SHP1YBL058W RPL18AP0CX49 186 aaKnown RBP3.48□□□□□ -1.85
SHP1YBL058W RPL18BP0CX50 186 aaKnown RBP3.48□□□□□ -1.85
SHP1YBL058W NSE4P43124 402 aa3.48□□□□□ -1.85
SHP1YBL058W CYT2Q00873 224 aa3.48□□□□□ -1.85
SHP1YBL058W YMR103CQ04436 120 aa3.48□□□□□ -1.85
SHP1YBL058W RPL29P05747 59 aaPredicted RBP3.47□□□□□ -1.85
SHP1YBL058W YDL022C-AP0C5L6 82 aa3.47□□□□□ -1.85
SHP1YBL058W POP3P53833 195 aaPredicted RBP3.47□□□□□ -1.85
SHP1YBL058W YLL006W-AQ3E814 58 aa3.47□□□□□ -1.85
SHP1YBL058W YGR121W-AQ3E816 71 aa3.47□□□□□ -1.85
SHP1YBL058W YER134CP40081 178 aa3.46□□□□□ -1.86
SHP1YBL058W PEX17P40155 199 aa3.46□□□□□ -1.86
SHP1YBL058W FYV4P38783 130 aaPredicted RBP3.45□□□□□ -1.86
SHP1YBL058W MRPS12P53732 153 aa3.44□□□□□ -1.86
SHP1YBL058W YNL190WP53872 204 aa3.44□□□□□ -1.86
SHP1YBL058W YML079WQ03629 201 aa3.44□□□□□ -1.86
SHP1YBL058W RPL28P02406 149 aaKnown RBP3.43□□□□□ -1.86
SHP1YBL058W HAP3P13434 144 aa3.43□□□□□ -1.86
SHP1YBL058W KRE1P17260 313 aa3.43□□□□□ -1.86
SHP1YBL058W DDR2P89113 61 aa3.43□□□□□ -1.86
SHP1YBL058W YPL261CQ08976 102 aa3.43□□□□□ -1.86
SHP1YBL058W HHO1P53551 258 aa3.42□□□□□ -1.86
SHP1YBL058W SPT4P32914 102 aaPredicted RBP3.41□□□□□ -1.86
SHP1YBL058W YKR041WP36134 250 aa3.41□□□□□ -1.86
SHP1YBL058W MRPL24P36525 258 aaPredicted RBP3.41□□□□□ -1.86
SHP1YBL058W YPL257WQ08974 193 aa3.41□□□□□ -1.86
SHP1YBL058W MRPL11P36521 249 aaPredicted RBP3.4□□□□□ -1.87
SHP1YBL058W HPA2Q06592 156 aa3.4□□□□□ -1.87
SHP1YBL058W YNL042W-BQ3E7Z2 85 aa3.4□□□□□ -1.87
SHP1YBL058W ZEO1Q08245 113 aa3.39□□□□□ -1.87
SHP1YBL058W YOR020W-AQ3E824 90 aa3.39□□□□□ -1.87
SHP1YBL058W RPL26AP05743 127 aaKnown RBP3.38□□□□□ -1.87
SHP1YBL058W YPL073CP40323 161 aa3.38□□□□□ -1.87
SHP1YBL058W RPL26BP53221 127 aaKnown RBP3.38□□□□□ -1.87
SHP1YBL058W YEL067CP39978 195 aa3.37□□□□□ -1.87
SHP1YBL058W GTT1P40582 234 aa3.37□□□□□ -1.87
SHP1YBL058W YMR230W-AQ3E7B5 62 aa3.37□□□□□ -1.87
SHP1YBL058W COX10P21592 462 aa3.36□□□□□ -1.87
SHP1YBL058W RPL37BP51402 88 aaKnown RBP3.36□□□□□ -1.87
SHP1YBL058W UGX2P32772 223 aa3.35□□□□□ -1.87
SHP1YBL058W BSC4P53841 131 aa3.35□□□□□ -1.87
SHP1YBL058W ARL3Q02804 198 aa3.35□□□□□ -1.87
SHP1YBL058W YBR230W-AQ3E762 66 aa3.35□□□□□ -1.87
SHP1YBL058W YAL063C-AQ3E791 96 aa3.35□□□□□ -1.87
SHP1YBL058W SCS22Q6Q595 175 aa3.35□□□□□ -1.87
SHP1YBL058W ATP5P09457 212 aa3.34□□□□□ -1.87
SHP1YBL058W YBR027CP38220 110 aa3.34□□□□□ -1.87
SHP1YBL058W YJL127C-BQ3E828 52 aa3.34□□□□□ -1.87
SHP1YBL058W MID2P36027 376 aa3.33□□□□□ -1.88
SHP1YBL058W YHL018WP38744 120 aaPredicted RBP3.33□□□□□ -1.88
SHP1YBL058W YNR077CP53758 84 aa3.33□□□□□ -1.88
SHP1YBL058W YHR007C-AQ07074 71 aa3.33□□□□□ -1.88
SHP1YBL058W YLR050CQ12155 161 aaKnown RBP3.33□□□□□ -1.88
SHP1YBL058W ICY1Q04329 127 aa3.32□□□□□ -1.88
SHP1YBL058W IRC21Q04772 201 aa3.32□□□□□ -1.88
SHP1YBL058W FYV5P25585 152 aa3.31□□□□□ -1.88
SHP1YBL058W PAU17Q12370 124 aa3.31□□□□□ -1.88
SHP1YBL058W IGO2Q9P305 131 aa3.31□□□□□ -1.88
SHP1YBL058W YLR236CA0A023PZG4 107 aa3.3□□□□□ -1.88
SHP1YBL058W YFR057WP43625 151 aa3.3□□□□□ -1.88
SHP1YBL058W YKL044WP36092 106 aa3.29□□□□□ -1.88
SHP1YBL058W TIM11P81449 96 aaPredicted RBP3.29□□□□□ -1.88
SHP1YBL058W RGM1Q00453 211 aa3.29□□□□□ -1.88
SHP1YBL058W YOR072WQ08486 104 aa3.29□□□□□ -1.88
SHP1YBL058W MRPL44P19956 98 aa3.28□□□□□ -1.88
SHP1YBL058W YHL005CP38752 130 aa3.28□□□□□ -1.88
SHP1YBL058W YIA6P40556 373 aa3.28□□□□□ -1.88
SHP1YBL058W CNL1Q06333 122 aa3.28□□□□□ -1.88
SHP1YBL058W HHF1P02309 103 aaKnown RBP3.27□□□□□ -1.89
SHP1YBL058W YNL122CP53921 115 aaPredicted RBP3.27□□□□□ -1.89
SHP1YBL058W SEC11P15367 167 aa3.26□□□□□ -1.89
SHP1YBL058W YOR034C-AQ3E735 80 aa3.26□□□□□ -1.89
SHP1YBL058W RPL36BO14455 100 aaKnown RBP3.24□□□□□ -1.89
SHP1YBL058W COX7P10174 60 aa3.24□□□□□ -1.89
SHP1YBL058W SFT1P43682 97 aa3.24□□□□□ -1.89
SHP1YBL058W SEN15Q04675 128 aa3.24□□□□□ -1.89
SHP1YBL058W YHR139C-AO13536 103 aa3.23□□□□□ -1.89
SHP1YBL058W BET1P22804 142 aa3.23□□□□□ -1.89
SHP1YBL058W YNL184CP53876 108 aa3.23□□□□□ -1.89
SHP1YBL058W CUE4Q04201 117 aaPredicted RBP3.23□□□□□ -1.89
SHP1YBL058W YIL134C-AQ45U18 67 aa3.23□□□□□ -1.89
SHP1YBL058W YGL230CP53074 147 aa3.22□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 56.4 ms