RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CHURC1-FNTBB4DL54 471 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CYP2D6P10635 497 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ARSEP51690 589 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 EFEMP1Q12805 493 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 USP10Q14694 798 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 USP45Q70EL2 814 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CYP4Z2PQ8N1L4 340 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ST13P5Q8NFI4 369 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 C19orf60Q96EN9 201 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 STRBPQ96SI9 672 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 UBE2OQ9C0C9 1292 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CAAP1Q9H8G2 361 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 FAM49BQ9NUQ9 324 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 BLOC1S6Q9UL45 172 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TMCC3Q9ULS5 477 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CDYLQ9Y232 598 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ALG6Q9Y672 507 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RGS12O14924 1447 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GLI2P10070 1586 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ROBO2Q9HCK4 1378 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ICAM1P05362 532 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CLTBP09497 229 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 C4BPBP20851 252 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PDIA2Q13087 525 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SNRNP35Q16560 246 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 MIB1Q86YT6 1006 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ICA1LQ8NDH6 482 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TDRD7Q8NHU6 1098 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CASP10Q92851 521 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 AP1M1Q9BXS5 423 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GOLPH3Q9H4A6 298 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 BRD9Q9H8M2 597 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 DNPEPQ9ULA0 475 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GON4LQ3T8J9 2241 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CYP7B1O75881 506 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 VCAM1P19320 739 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 GPD1P21695 349 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CDC25BP30305 580 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 AXLP30530 894 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 CCNG1P51959 295 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 KIF23Q02241 960 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TBL3Q12788 808 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM164Q5U3C3 297 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 AGAP9Q5VTM2 703 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TLK2Q86UE8 772 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 NUP93Q8N1F7 819 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 MAP4K1Q92918 833 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PARVBQ9HBI1 364 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ANKEF1Q9NU02 776 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 RBAK-RBAKDNI3L0D1 243 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 COX7A2P14406 83 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PLA2G4AP47712 749 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SERPINB9P50453 376 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 NUP107P57740 925 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 SUZ12Q15022 739 aaKnown RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 IYDQ6PHW0 289 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PRR23BQ6ZRT6 265 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ZKSCAN4Q969J2 545 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-217ENST00000637988 TCF25Q9BQ70 676 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 ABHD16BQ9H3Z7 469 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 AURKCQ9UQB9 309 aa6.35□□□□□ -1.39
SCN1A-217ENST00000637988 PVALEFA0A1B0GWK0 134 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 STAU1O95793 577 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ITGB3P05106 788 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 BCAT1P54687 386 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SESN2P58004 480 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM32Q13049 653 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 KYNUQ16719 465 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 RETSATQ6NUM9 610 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TRAPPC11Q7Z392 1133 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CCDC126Q96EE4 140 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MCEEQ96PE7 176 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 MXRA8Q9BRK3 442 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 DDIT4Q9NX09 232 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 IMPAD1Q9NX62 359 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SPRP35270 261 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CCT8P50990 548 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 GEMP55040 296 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 PKN2Q16513 984 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 USP41Q3LFD5 358 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CAPSLQ8WWF8 208 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TLE6Q9H808 572 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 RSAD1Q9HA92 442 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 LRRC4BQ9NT99 713 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ENTPD4Q9Y227 616 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 ZNF286BP0CG31 522 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TGFB3P10600 412 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 KCNK10P57789 538 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 C2orf54Q08AI8 447 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 BIKQ13323 160 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 C1orf146Q5VVC0 180 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 HIBCHQ6NVY1 386 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CDC42EP5Q6NZY7 148 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 LRRC74BQ6ZQY2 392 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CXorf40BQ96DE9 158 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 CLCC1Q96S66 551 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 SPATA9Q9BWV2 254 aa6.34□□□□□ -1.39
SCN1A-217ENST00000637988 REXO4Q9GZR2 422 aaKnown RBP6.34□□□□□ -1.39
SCN1A-217ENST00000637988 TASP1Q9H6P5 420 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms