RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 PHLDB3Q6NSJ2 640 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 C1orf228Q6PIY5 440 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 TMEM270Q6UE05 265 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 MFSD6LQ8IWD5 586 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 SCML4Q8N228 414 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 ZMIZ2Q8NF64 920 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 SHC3Q92529 594 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 ELMO3Q96BJ8 720 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 MSANTD3Q96H12 275 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 SMOQ99835 787 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 PLCB1Q9NQ66 1216 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 FAM49BQ9NUQ9 324 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 HESX1Q9UBX0 185 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 CACNA1HO95180 2353 aa19.33■□□□□ 0.68
CLN3-259ENST00000637551 O00370 1275 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 OLFM2O95897 454 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 ZDHHC11BP0C7U3 371 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 PSMC3P17980 439 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 CACNA2D1P54289 1103 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 PLCB2Q00722 1185 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 KRT31Q15323 416 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 ANO6Q4KMQ2 910 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 LCLAT1Q6UWP7 414 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 CREBRFQ8IUR6 639 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 ARID3BQ8IVW6 561 aaPredicted RBP19.32■□□□□ 0.68
CLN3-259ENST00000637551 CELF5Q8N6W0 485 aaKnown RBP19.32■□□□□ 0.68
CLN3-259ENST00000637551 STKLD1Q8NE28 680 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 GPR152Q8TDT2 470 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 KREMEN1Q96MU8 473 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 UTP3Q9NQZ2 479 aaKnown RBP eCLIP19.32■□□□□ 0.68
CLN3-259ENST00000637551 FANCLQ9NW38 375 aa19.32■□□□□ 0.68
CLN3-259ENST00000637551 MAGED2Q9UNF1 606 aaPredicted RBP19.32■□□□□ 0.68
CLN3-259ENST00000637551 MYO16Q9Y6X6 1858 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 TRAV19A0A0A6YYK7 116 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ZNF840PA6NDX5 716 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 HHLA1C9JL84 531 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 XPO1O14980 1071 aaKnown RBP19.31■□□□□ 0.68
CLN3-259ENST00000637551 GFRA3O60609 400 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 USP17L7P0C7H9 530 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 GLULP15104 373 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ZNF165P49910 485 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 BST2Q10589 180 aaKnown RBP19.31■□□□□ 0.68
CLN3-259ENST00000637551 LRMPQ12912 555 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 CNGA2Q16280 664 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ZNF394Q53GI3 561 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 RAB41Q5JT25 222 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 FKBP15Q5T1M5 1219 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 SDHAF4Q5VUM1 108 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 CCDC186Q7Z3E2 898 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ARHGEF19Q8IW93 802 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 RBBP8NLQ8NC74 664 aaPredicted RBP19.31■□□□□ 0.68
CLN3-259ENST00000637551 IRF7Q92985 503 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ASIC4Q96FT7 647 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 ZSWIM3Q96MP5 696 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 CDK5RAP1Q96SZ6 601 aaKnown RBP19.31■□□□□ 0.68
CLN3-259ENST00000637551 KCNK16Q96T55 309 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 SLC46A2Q9BY10 475 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 UBE2TQ9NPD8 197 aaPredicted RBP19.31■□□□□ 0.68
CLN3-259ENST00000637551 SCML2Q9UQR0 700 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 PCDHB4Q9Y5E5 795 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 USP3Q9Y6I4 520 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 F5P12259 2224 aa19.31■□□□□ 0.68
CLN3-259ENST00000637551 PTPRZ1P23471 2315 aaPredicted RBP19.3■□□□□ 0.68
CLN3-259ENST00000637551 LGALS16A8MUM7 142 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 CHADO15335 359 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 MED7O43513 233 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 ADORA2BP29275 332 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 PLA2G4AP47712 749 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 KIF11P52732 1056 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 MAP3K7CLP57077 242 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 SLC7A9P82251 487 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 PKDCCQ504Y2 493 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 ARHGAP29Q52LW3 1261 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 KLHDC10Q6PID8 442 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 POTEHQ6S545 545 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 DDX42Q86XP3 938 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-259ENST00000637551 KCTD13Q8WZ19 329 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 PBXIP1Q96AQ6 731 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 CRACR2AQ9BSW2 395 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 TRMT61BQ9BVS5 477 aaKnown RBP19.3■□□□□ 0.68
CLN3-259ENST00000637551 SIX2Q9NPC8 291 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 CYLDQ9NQC7 956 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 TLR8Q9NR97 1041 aaKnown RBP19.3■□□□□ 0.68
CLN3-259ENST00000637551 TDP1Q9NUW8 608 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 TSPAN16Q9UKR8 245 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 ARHGAP26Q9UNA1 814 aa19.3■□□□□ 0.68
CLN3-259ENST00000637551 WDR3Q9UNX4 943 aaKnown RBP eCLIP19.3■□□□□ 0.68
CLN3-259ENST00000637551 COL4A2P08572 1712 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 DPYSL4O14531 572 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 OAS1P00973 400 aaKnown RBP19.29■□□□□ 0.68
CLN3-259ENST00000637551 SLC9A1P19634 815 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 NUBP1P53384 320 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 BPIFB4P59827 614 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 USP46P62068 366 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 CYP4F8P98187 520 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 PRKCQQ04759 706 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 TAF10Q12962 218 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 ORC1Q13415 861 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 TANGO2Q6ICL3 276 aa19.29■□□□□ 0.68
CLN3-259ENST00000637551 RRAGAQ7L523 313 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms