RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 TRPV4Q9HBA0 871 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 ZNF334Q9HCZ1 680 aaPredicted RBP19.22■□□□□ 0.67
CLN3-243ENST00000635973 FAM49BQ9NUQ9 324 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 NDRG2Q9UN36 371 aaKnown RBP19.22■□□□□ 0.67
CLN3-243ENST00000635973 PCDHB4Q9Y5E5 795 aa19.22■□□□□ 0.67
CLN3-243ENST00000635973 CACNA1IQ9P0X4 2223 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 HEPACAM2A8MVW5 462 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 ATP1A3P13637 1013 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 CCDC130P13994 396 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 SLC9A1P19634 815 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 TARSP26639 723 aaKnown RBP19.21■□□□□ 0.67
CLN3-243ENST00000635973 PON1P27169 355 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 ANXA13P27216 316 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 GABRR2P28476 465 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 GRIK1P39086 918 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 VSTM1Q6UX27 236 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 LUZP1Q86V48 1076 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 TMC8Q8IU68 726 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 CRYBG2Q8N1P7 616 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 GIPC2Q8TF65 315 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 KAT5Q92993 513 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 FAM81BQ96LP2 452 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 HEXIM2Q96MH2 286 aaKnown RBP19.21■□□□□ 0.67
CLN3-243ENST00000635973 LRRC3Q9BY71 257 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 ZNF518BQ9C0D4 1074 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 UBE2TQ9NPD8 197 aaPredicted RBP19.21■□□□□ 0.67
CLN3-243ENST00000635973 APEX2Q9UBZ4 518 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 LIMA1Q9UHB6 759 aaKnown RBP19.21■□□□□ 0.67
CLN3-243ENST00000635973 FBXO4Q9UKT5 387 aa19.21■□□□□ 0.67
CLN3-243ENST00000635973 FANCMQ8IYD8 2048 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 NUP210Q8TEM1 1887 aaPredicted RBP19.2■□□□□ 0.66
CLN3-243ENST00000635973 CLDN5O00501 218 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 NRG2O14511 850 aaPredicted RBP19.2■□□□□ 0.66
CLN3-243ENST00000635973 ATF6P18850 670 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 MAGEA11P43364 429 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 GPR15P49685 360 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 MFAP3P55082 362 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 CSTF1Q05048 431 aaKnown RBP19.2■□□□□ 0.66
CLN3-243ENST00000635973 IQCB1Q15051 598 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 DDR2Q16832 855 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 GPR158Q5T848 1215 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 SDHAF4Q5VUM1 108 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 TMEM270Q6UE05 265 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 LRSAM1Q6UWE0 723 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 FAM35AQ86V20 835 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 C12orf29Q8N999 325 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 SLC2A14Q8TDB8 520 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 WHAMMQ8TF30 809 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 FAM3CQ92520 227 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 TMEM176AQ96HP8 235 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 LSM14BQ9BX40 385 aaKnown RBP19.2■□□□□ 0.66
CLN3-243ENST00000635973 B3GNT5Q9BYG0 378 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 HSD3B7Q9H2F3 369 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 TRPV5Q9NQA5 729 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 KRT82Q9NSB4 513 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 PIAS3Q9Y6X2 628 aa19.2■□□□□ 0.66
CLN3-243ENST00000635973 ZNF638Q14966 1978 aaKnown RBP19.2■□□□□ 0.66
CLN3-243ENST00000635973 PTPRZ1P23471 2315 aaPredicted RBP19.19■□□□□ 0.66
CLN3-243ENST00000635973 LGALS16A8MUM7 142 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 TRIM66O15016 1216 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 KRT5P13647 590 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 CD19P15391 556 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 ADORA2BP29275 332 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 CDC25CP30307 473 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 RPS9P46781 194 aaKnown RBP19.19■□□□□ 0.66
CLN3-243ENST00000635973 RAD23BP54727 409 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 APBA1Q02410 837 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 ZNF528Q3MIS6 628 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 GJB7Q6PEY0 223 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 ENOSF1Q7L5Y1 443 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 GPIHBP1Q8IV16 184 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 ARID3BQ8IVW6 561 aaPredicted RBP19.19■□□□□ 0.66
CLN3-243ENST00000635973 SLC4A11Q8NBS3 891 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 ATRIPQ8WXE1 791 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 CLDN23Q96B33 292 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 SMARCD1Q96GM5 515 aa19.19■□□□□ 0.66
CLN3-243ENST00000635973 PCMTD1Q96MG8 357 aaPredicted RBP19.19■□□□□ 0.66
CLN3-243ENST00000635973 AP1G2O75843 785 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 KPNA1P52294 538 aaPredicted RBP19.18■□□□□ 0.66
CLN3-243ENST00000635973 UBXN1Q04323 297 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 PPP2R5DQ14738 602 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 ARHGAP44Q17R89 818 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 FILIP1LQ4L180 1135 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 STXBP5Q5T5C0 1151 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 C1orf228Q6PIY5 440 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 GAREM2Q75VX8 874 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 CYFIP2Q96F07 1278 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 KREMEN1Q96MU8 473 aa19.18■□□□□ 0.66
CLN3-243ENST00000635973 MAGED2Q9UNF1 606 aaPredicted RBP19.18■□□□□ 0.66
CLN3-243ENST00000635973 RIF1Q5UIP0 2472 aaKnown RBP19.17■□□□□ 0.66
CLN3-243ENST00000635973 FAM186AA6NE01 2351 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 F8VP50 259 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 CHADO15335 359 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 SERPINC1P01008 464 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 FAM200BP0CF97 657 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 CSH1P0DML2 217 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 CSH2P0DML3 217 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 ACO1P21399 889 aaKnown RBP19.17■□□□□ 0.66
CLN3-243ENST00000635973 FUKQ8N0W3 1084 aa19.17■□□□□ 0.66
CLN3-243ENST00000635973 UBR7Q8N806 425 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms