RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CCDC125Q86Z20 511 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 IGDCC3Q8IVU1 814 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 TCP10LQ8TDR4 215 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SLC44A1Q8WWI5 657 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 HSPH1Q92598 858 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 RTP4Q96DX8 246 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 ADAM33Q9BZ11 813 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 SAR1AQ9NR31 198 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 PRMT7Q9NVM4 692 aaPredicted RBP13.34□□□□□ -0.27
LINC00540-203ENST00000631321 TEX264Q9Y6I9 313 aa13.34□□□□□ -0.27
LINC00540-203ENST00000631321 C2CD4BA6NLJ0 364 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 M0QYV0 167 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 CHADO15335 359 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 IQCF3P0C7M6 154 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 STAG3L1P0CL83 205 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 TARSP26639 723 aaKnown RBP13.33□□□□□ -0.27
LINC00540-203ENST00000631321 NEK3P51956 506 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 TNFAIP2Q03169 654 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 ORC1Q13415 861 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 TFDP2Q14188 446 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 JADE1Q6IE81 842 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 EFCAB12Q6NXP0 572 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 NLRP9Q7RTR0 991 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 CDR2LQ86X02 465 aaPredicted RBP13.33□□□□□ -0.27
LINC00540-203ENST00000631321 GPATCH11Q8N954 259 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 NSMCE1Q8WV22 266 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 TRAPPC12Q8WVT3 735 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 SPATA33Q96N06 139 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 ADPGKQ9BRR6 497 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 SMARCAD1Q9H4L7 1026 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 ASB7Q9H672 318 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 TLE6Q9H808 572 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 PNPLA8Q9NP80 782 aa13.33□□□□□ -0.27
LINC00540-203ENST00000631321 ANK1P16157 1881 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 IQANK1A0A1B0GTG1 560 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 SLC25A27O95847 323 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 ITGB3P05106 788 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 TROVE2P10155 538 aaKnown RBP eCLIP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 P4HA1P13674 534 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 GPD1P21695 349 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 ELK3P41970 407 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 ETV4P43268 484 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 RASSF2P50749 326 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 BASP1P80723 227 aaKnown RBP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 INCA1Q0VD86 236 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 AMHR2Q16671 573 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 PLEKHG4Q58EX7 1191 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 FAM102AQ5T9C2 384 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 IFNLR1Q8IU57 520 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 CALN1Q9BXU9 219 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 FRMD8Q9BZ67 464 aaPredicted RBP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 USP29Q9HBJ7 922 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 KANSL3Q9P2N6 904 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 LNPEPQ9UIQ6 1025 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 HAO1Q9UJM8 370 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 RPL26L1Q9UNX3 145 aaKnown RBP13.33□□□□□ -0.28
LINC00540-203ENST00000631321 CHMP2BQ9UQN3 213 aa13.33□□□□□ -0.28
LINC00540-203ENST00000631321 TCRBV9S1A1TA0A576 114 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 HNRNPCL1O60812 293 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 C22orf31O95567 290 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 STAU1O95793 577 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 IL1BP01584 269 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MT-ND3P03897 115 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 IBSPP21815 317 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 CLCN3P51790 818 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 SLC8A3P57103 927 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 PRKG1Q13976 671 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 SEPT7Q16181 437 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 TMEM132AQ24JP5 1023 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 CTC1Q2NKJ3 1217 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 TRNP1Q6NT89 227 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 DARS2Q6PI48 645 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 LCLAT1Q6UWP7 414 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 DEFB132Q7Z7B7 95 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 DHX37Q8IY37 1157 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MAB21L3Q8N8X9 362 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 USP6NLQ92738 828 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 RSRC1Q96IZ7 334 aaKnown RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF668Q96K58 619 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MIS12Q9H081 205 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 R3HDMLQ9H3Y0 253 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MANSC1Q9H8J5 431 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 IFT122Q9HBG6 1241 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 SLC17A7Q9P2U7 560 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 KIAA1257Q9ULG3 409 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 BARX2Q9UMQ3 279 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 DNAJC25-GNG10A0A024R161 153 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 TGDSO95455 350 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 C1QAP02745 245 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 CYP3A5P20815 502 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MAGEA6P43360 314 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 CDH6P55285 790 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 ZNF200P98182 395 aaPredicted RBP13.32□□□□□ -0.28
LINC00540-203ENST00000631321 MMRN1Q13201 1228 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 NPNTQ6UXI9 565 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 ILDR2Q71H61 639 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 TMEM130Q8N3G9 435 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 CNKSR2Q8WXI2 1034 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 APOPT1Q96IL0 206 aa13.32□□□□□ -0.28
LINC00540-203ENST00000631321 RNF157Q96PX1 679 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms