RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 NCF1P14598 390 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-219ENST00000620786 ITGALP20701 1170 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 SOX11P35716 441 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 SGCGQ13326 291 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 TRIM65Q6PJ69 517 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 EFL1Q7Z2Z2 1120 aaKnown RBP11.79□□□□□ -0.52
CLIP1-219ENST00000620786 PDGFDQ9GZP0 370 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-219ENST00000620786 SNCAIPQ9Y6H5 919 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 DYRK3O43781 588 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 VPS26AO75436 327 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 HOXC6P09630 235 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 AXLP30530 894 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 RFX3P48380 749 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 HIC1Q14526 733 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 NBPF20Q3BBV1 942 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 TMEM199Q8N511 208 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 TRAPPC12Q8WVT3 735 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 JADE3Q92613 823 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 SYN2Q92777 582 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-219ENST00000620786 WDR24Q96S15 920 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 EPC1Q9H2F5 836 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 NPHS2Q9NP85 383 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 DYRK1BQ9Y463 629 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 NWD1Q149M9 1564 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 KRT87PA6NCN2 255 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 CCDC85CA6NKD9 419 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 FKTNO75072 461 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 MLNP12872 115 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 CTCFP49711 727 aaPredicted RBP11.79□□□□□ -0.52
CLIP1-219ENST00000620786 DACT2Q5SW24 774 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 ZNF438Q7Z4V0 828 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 VPS37AQ8NEZ2 397 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 FICDQ9BVA6 458 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 KCTD10Q9H3F6 313 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 FBXO44Q9H4M3 255 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 CYP3A43Q9HB55 503 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 RAD18Q9NS91 495 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 MAP3K6O95382 1288 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 KCNK10P57789 538 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 INHBEP58166 350 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 FAM83EQ2M2I3 478 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 C2CD6Q53TS8 623 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 KCNT1Q5JUK3 1230 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 IQSEC1Q6DN90 963 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 RD3Q7Z3Z2 195 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 MYO1HQ8N1T3 1032 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 PLEKHA8Q96JA3 519 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 ADGRE3Q9BY15 652 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 NT5MQ9NPB1 228 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 AP4E1Q9UPM8 1137 aa11.79□□□□□ -0.52
CLIP1-219ENST00000620786 ACAT1P24752 427 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 OCA2Q04671 838 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 DDX39BQ13838 428 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 RASGRP2Q7LDG7 609 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ICA1LQ8NDH6 482 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 BTN2A2Q8WVV5 523 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 SMARCAL1Q9NZC9 954 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 UXTQ9UBK9 157 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CRTAMO95727 393 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ENO3P13929 434 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 DARSP14868 501 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 FKBP1AP62942 108 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 MROH9Q5TGP6 573 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ZNF410Q86VK4 478 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ZNF555Q8NEP9 628 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CISHQ9NSE2 258 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 NMRK1Q9NWW6 199 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 H2AFY2Q9P0M6 372 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 FOXN3O00409 490 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CABYRO75952 493 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 GRK3P35626 688 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 COILP38432 576 aaPredicted RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 FNDC3BQ53EP0 1204 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 C10orf53Q8N6V4 93 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 TMC2Q8TDI7 906 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 KAT2BQ92831 832 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ERLEC1Q96DZ1 483 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CLPBQ9H078 707 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 PPCSQ9HAB8 311 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CNTN2Q02246 1040 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 SP3Q02447 781 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 PRUNE1Q86TP1 453 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 C11orf74Q86VG3 221 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 FAM131BQ86XD5 332 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CCDC3Q9BQI4 270 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 ETNK1Q9HBU6 452 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 SMPD4Q9NXE4 827 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 NOP53Q9NZM5 478 aaKnown RBP11.78□□□□□ -0.52
CLIP1-219ENST00000620786 GTF3C4Q9UKN8 822 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 NCKAP1Q9Y2A7 1128 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CAND2O75155 1236 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 CYP11B1P15538 503 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 TBX4P57082 545 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 MAP3K10Q02779 954 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 SLC39A12Q504Y0 691 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 SPATA21Q7Z572 469 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 HORMAD1Q86X24 394 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 NT5DC4Q86YG4 428 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 EDEM1Q92611 657 aa11.78□□□□□ -0.52
CLIP1-219ENST00000620786 KLF6Q99612 283 aaPredicted RBP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms