RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 DNAJC16Q9Y2G8 782 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 PCDHA3Q9Y5H8 950 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 FRMPD4Q14CM0 1322 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 XPO1O14980 1071 aaKnown RBP14.51□□□□□ -0.09
CPSF1-212ENST00000616140 SYF2O95926 243 aaKnown RBP14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CHRM3P20309 590 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 NFIL3Q16649 462 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 WDR49Q8IV35 697 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 OR9Q1Q8NGQ5 310 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 DCUN1D1Q96GG9 259 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ACP6Q9NPH0 428 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CHCHD3Q9NX63 227 aaKnown RBP14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CCL15-CCL14A0A0B4J2E2 113 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 VTNP04004 478 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ZCCHC18P0CG32 403 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 STX5Q13190 355 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 RASA2Q15283 850 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CCL15Q16663 113 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 LINC00523Q86TU6 105 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CCT7Q99832 543 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 RXFP1Q9HBX9 757 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 GDF3Q9NR23 364 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 SPATA31A6Q5VVP1 1343 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 CES2O00748 559 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ELK3P41970 407 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 SLC12A3P55017 1021 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 NBPF12Q5TAG4 269 aaPredicted RBP14.51□□□□□ -0.09
CPSF1-212ENST00000616140 PTRHD1Q6GMV3 140 aaKnown RBP14.51□□□□□ -0.09
CPSF1-212ENST00000616140 TMEM176AQ96HP8 235 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 LRRC40Q9H9A6 602 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ZNF212Q9UDV6 495 aa14.51□□□□□ -0.09
CPSF1-212ENST00000616140 ADGRB2O60241 1585 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 A0A087WZ62 844 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 APOA4P06727 396 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 AKT1P31749 480 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 SERPINB5P36952 375 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 OR1G1P47890 313 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 LAMB3Q13751 1172 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 FBXO16Q8IX29 292 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-212ENST00000616140 SH3TC2Q8TF17 1288 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 CNDP1Q96KN2 507 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 FDXACB1Q9BRP7 624 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-212ENST00000616140 DNAJC18Q9H819 358 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 CAAP1Q9H8G2 361 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 COG4Q9H9E3 785 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 CHST7Q9NS84 486 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 ABI2Q9NYB9 513 aaPredicted RBP14.5□□□□□ -0.09
CPSF1-212ENST00000616140 DPYSL4O14531 572 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 TIMM44O43615 452 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 JCHAINP01591 159 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 RPL10AP62906 217 aaKnown RBP14.5□□□□□ -0.09
CPSF1-212ENST00000616140 CXCL9Q07325 125 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 RRM2BQ7LG56 351 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 SLFN11Q7Z7L1 901 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 SCUBE1Q8IWY4 988 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 LZICQ8WZA0 190 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 GID8Q9NWU2 228 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 MYBL2P10244 700 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 RALBP11234 206 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 CALB2P22676 271 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 PGM5Q15124 567 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 SGO1Q5FBB7 561 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 MIIPQ5JXC2 388 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 ZFPM1Q8IX07 1006 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 TAGAPQ8N103 731 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 HAS1Q92839 578 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 PGM2Q96G03 612 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 PPP1R2P1Q96PQ5 205 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 TMEM120AQ9BXJ8 343 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 MUC3BQ9H195 1237 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 TRPC7Q9HCX4 862 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 DCDC2Q9UHG0 476 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 DTNAQ9Y4J8 743 aa14.5□□□□□ -0.09
CPSF1-212ENST00000616140 ITSN1Q15811 1721 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 H0Y626 953 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 DNALI1O14645 258 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TRIM16O95361 564 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 MAPTP10636 758 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 AVPR1AP37288 418 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PRKCIP41743 596 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 BCAT1P54687 386 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PPP3CAQ08209 521 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 GRIK5Q16478 980 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 APOBEC3HQ6NTF7 200 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PARK7Q99497 189 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 DNPEPQ9ULA0 475 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 LZTS1Q9Y250 596 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 GJB6O95452 261 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 ATP6V1E1P36543 226 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 KCNK10P57789 538 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 PAN2Q504Q3 1202 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 MIB1Q86YT6 1006 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 DCP1BQ8IZD4 617 aaKnown RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 BLOC1S5Q8TDH9 187 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TCP10LQ8TDR4 215 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TUBGCP3Q96CW5 907 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 L3MBTL3Q96JM7 780 aaPredicted RBP14.49□□□□□ -0.09
CPSF1-212ENST00000616140 ZCWPW1Q9H0M4 648 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 TRPC5OSA6NMA1 111 aa14.49□□□□□ -0.09
CPSF1-212ENST00000616140 RHOBTB1O94844 696 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms