RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MRPS23Q9Y3D9 190 aaKnown RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 INSL6Q9Y581 213 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SMG1Q96Q15 3661 aaKnown RBP5.2□□□□□ -1.58
LINC00540-201ENST00000611481 HECTD1Q9ULT8 2610 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 SALL1Q9NSC2 1324 aa5.2□□□□□ -1.58
LINC00540-201ENST00000611481 ZNFX1Q9P2E3 1918 aaKnown RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 PI4KAP2A4QPH2 592 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 HMGB1P1B2RPK0 211 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 KINO60870 393 aaKnown RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 CDC45O75419 566 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 RASGRP1O95267 797 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SNAI1O95863 264 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 PDGFRBP09619 1106 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SUPT20HL2P0C7V6 817 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SP9P0CG40 484 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 NR4A1P22736 598 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 BTDP43251 543 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 IRF9Q00978 393 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SLC6A3Q01959 620 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 COASYQ13057 564 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 LONRF2Q1L5Z9 754 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 CCDC57Q2TAC2 916 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 CC2D1AQ6P1N0 951 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 ADGRG3Q86Y34 549 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 PI4KAP1Q8N8J0 262 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 NTN5Q8WTR8 489 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 APPBP2Q92624 585 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 PMM1Q92871 262 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SECISBP2LQ93073 1101 aaKnown RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 C12orf42Q96LP6 360 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 WDR92Q96MX6 357 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 RTP3Q9BQQ7 232 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 SEZ6LQ9BYH1 1024 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 PUS3Q9BZE2 481 aaKnown RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 RPAP3Q9H6T3 665 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 KCMF1Q9P0J7 381 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 NDOR1Q9UHB4 597 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 ZBTB21Q9ULJ3 1066 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 BARX2Q9UMQ3 279 aaPredicted RBP5.19□□□□□ -1.58
LINC00540-201ENST00000611481 HS3ST4Q9Y661 456 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 MAPK8IP3Q9UPT6 1336 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 ATG2AQ2TAZ0 1938 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 MYO10Q9HD67 2058 aa5.19□□□□□ -1.58
LINC00540-201ENST00000611481 LOC105378220A0A1B0GUY1 285 aaPredicted RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 GRM6O15303 877 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 NPTXRO95502 500 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 FAM153BP0C7A2 387 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 ATF7P17544 494 aaPredicted RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 GNAT2P19087 354 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 FNTBP49356 437 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 RIPK4P57078 832 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 ACVR2BQ13705 512 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 TCTN1Q2MV58 587 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 TIGD2Q4W5G0 525 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 DCAF17Q5H9S7 520 aaPredicted RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 HECTD2Q5U5R9 776 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 ZKSCAN2Q63HK3 967 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 LMBR1LQ6UX01 489 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 KSR2Q6VAB6 950 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 FMNL3Q8IVF7 1028 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 CCDC146Q8IYE0 955 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 GSTCDQ8NEC7 633 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 CPT1CQ8TCG5 803 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 ST8SIA2Q92186 375 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 BBC3Q96PG8 261 aaPredicted RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 DEPDC7Q96QD5 511 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 PLEKHF1Q96S99 279 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 CCDC113Q9H0I3 377 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 SNTG2Q9NY99 539 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 GABBR1Q9UBS5 961 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 HERC5Q9UII4 1024 aaKnown RBP5.18□□□□□ -1.58
LINC00540-201ENST00000611481 MROH5Q6ZUA9 1318 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 FANCMQ8IYD8 2048 aa5.18□□□□□ -1.58
LINC00540-201ENST00000611481 TANC1Q9C0D5 1861 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 ABHD14A-ACY1A0A1B0GW23 586 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 CHL1O00533 1208 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 DAPK3O43293 454 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 ZEB2O60315 1214 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 RECQL4O94761 1208 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 PRLP01236 227 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 CD38P28907 300 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 USP14P54578 494 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 NPEPPSP55786 919 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 SPIDRQ14159 915 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 COG2Q14746 738 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 FSCN1Q16658 493 aaKnown RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 ZC3H12BQ5HYM0 836 aaKnown RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 SLFN12LQ6IEE8 588 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 OLFML1Q6UWY5 402 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 MYOCDQ8IZQ8 938 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 CMTM4Q8IZR5 234 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 PRPF38AQ8NAV1 312 aaKnown RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 DYDC2Q96IM9 177 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 FAM193BQ96PV7 902 aaPredicted RBP5.17□□□□□ -1.58
LINC00540-201ENST00000611481 BOCQ9BWV1 1114 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 UBA5Q9GZZ9 404 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 LMAN2LQ9H0V9 348 aa5.17□□□□□ -1.58
LINC00540-201ENST00000611481 CYP4F11Q9HBI6 524 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms