RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 SGK1O00141 431 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 LEFTY2O00292 366 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 CDX4O14627 284 aaPredicted RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 ARHGAP6O43182 974 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 CYP17A1P05093 508 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 TIE1P35590 1138 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 PTGER3P43115 390 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 MAPK8P45983 427 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 KDSRQ06136 332 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 SMARCB1Q12824 385 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 ZNF268Q14587 947 aaPredicted RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 RABEP1Q15276 862 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 PMS2CLQ68D20 193 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 FILIP1Q7Z7B0 1213 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 CBWD2Q8IUF1 395 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEFF1Q8IYR6 380 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 SYCP3Q8IZU3 236 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 LEO1Q8WVC0 666 aaPredicted RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 ATP2A3Q93084 1043 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 TRMT2BQ96GJ1 504 aaKnown RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 MYRFLQ96LU7 910 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 ACCSQ96QU6 501 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 SYT15Q9BQS2 421 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 MRPL45Q9BRJ2 306 aaKnown RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 ST6GALNAC4Q9H4F1 302 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM74BQ9NUR3 256 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 FBXO2Q9UK22 296 aaPredicted RBP9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 KIF3AQ9Y496 699 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 PCDHGA5Q9Y5G8 931 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 RAI2Q9Y5P3 530 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 CPQQ9Y646 472 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 PI4KAP42356 2102 aa9.25□□□□□ -0.93
SHKBP1-220ENST00000599716 TNRC6BQ9UPQ9 1833 aaKnown RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 CLDN5O00501 218 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 GABRDO14764 452 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 TRIM24O15164 1050 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 AKAP3O75969 853 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 RHOBTB1O94844 696 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 KLF8O95600 359 aaPredicted RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM191BP0C7N4 346 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 PAX3P23760 479 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 GRIK1P39086 918 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 PNPLA4P41247 253 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 WASP42768 502 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 AMPD2Q01433 879 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 CFAP221Q4G0U5 840 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 FBXO43Q4G163 708 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 MDH1BQ5I0G3 518 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 RRAGBQ5VZM2 374 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 FAM171BQ6P995 826 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 CYP2U1Q7Z449 544 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 PDILTQ8N807 584 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 NAT16Q8N8M0 369 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 RDH13Q8NBN7 331 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 TXNDC5Q8NBS9 432 aaKnown RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 OR2I1PQ8NGU4 316 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 WBP2Q969T9 261 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 ACDQ96AP0 544 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 PCED1BQ96HM7 432 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 HPDLQ96IR7 371 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 FNBP1Q96RU3 617 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 DPEP3Q9H4B8 488 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM206Q9H813 350 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 ABCB6Q9NP58 842 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 GDAP2Q9NXN4 497 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 CFAP97Q9P2B7 532 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 MAGEC2Q9UBF1 373 aaPredicted RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 UXTQ9UBK9 157 aaPredicted RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 MBD1Q9UIS9 605 aaPredicted RBP9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 ITGA11Q9UKX5 1188 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 ARHGAP26Q9UNA1 814 aa9.24□□□□□ -0.93
SHKBP1-220ENST00000599716 ATMQ13315 3056 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 SPAARA0A1B0GVQ0 90 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 ZNF840PA6NDX5 716 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 F8VP50 259 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 TK2O00142 265 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 KHNYNO15037 678 aaKnown RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 HYAL3O43820 417 aaPredicted RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 C1QL1O75973 258 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 NFATC1O95644 943 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CST3P01034 146 aaPredicted RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CAPNS1P04632 268 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CHRM1P11229 460 aaPredicted RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CEACAM1P13688 526 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 HOXD13P35453 343 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 RBP5P82980 135 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 POSTNQ15063 836 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 DHCR24Q15392 516 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 CRY1Q16526 586 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 USP39Q53GS9 565 aaKnown RBP9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 SV2BQ7L1I2 683 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 HS2ST1Q7LGA3 356 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 ZNF605Q86T29 641 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 RASSF3Q86WH2 238 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 NT5DC4Q86YG4 428 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 TMEM86AQ8N2M4 240 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 TOP6BLQ8N6T0 577 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 LRRC52Q8N7C0 313 aa9.23□□□□□ -0.93
SHKBP1-220ENST00000599716 IL17RCQ8NAC3 791 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms