RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 FKBP3Q00688 224 aaKnown RBP12.9□□□□□ -0.34
LIG1-217ENST00000599165 PLCB2Q00722 1185 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 LRRC63Q05C16 580 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 MTF1Q14872 753 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 Q6ZS52 159 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 GPRIN1Q7Z2K8 1008 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 SLC2A14Q8TDB8 520 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 CSGALNACT1Q8TDX6 532 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 TATDN2Q93075 761 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 CCDC34Q96HJ3 373 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 TNIP3Q96KP6 325 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 MED15Q96RN5 788 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 EBF3Q9H4W6 596 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 LMAN1LQ9HAT1 526 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 CYP3A43Q9HB55 503 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 SPATA6Q9NWH7 488 aaPredicted RBP12.9□□□□□ -0.34
LIG1-217ENST00000599165 ARHGAP26Q9UNA1 814 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 COQ4Q9Y3A0 265 aa12.9□□□□□ -0.34
LIG1-217ENST00000599165 KINO60870 393 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 CKMP06732 381 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 USP17L7P0C7H9 530 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 ZDHHC11BP0C7U3 371 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 EPB41P11171 864 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 P4HA1P13674 534 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 HDCP19113 662 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 MAGEA9P43362 315 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 KPNA1P52294 538 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 SLC5A3P53794 718 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 RUNX3Q13761 415 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 CCINQ13939 588 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 GAB4Q2WGN9 574 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 ITPRIPL2Q3MIP1 535 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 TSSK4Q6SA08 328 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 MAMSTRQ6ZN01 415 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 CLEC20AQ6ZU45 233 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 RALGPS2Q86X27 583 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 NUP93Q8N1F7 819 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 SH3RF2Q8TEC5 729 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 EZH1Q92800 747 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 SMARCD1Q96GM5 515 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 MSANTD3Q96H12 275 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 DHTKD1Q96HY7 919 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 ZFRQ96KR1 1074 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 HNRNPABQ99729 332 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 LINC00597Q9H2U6 94 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 C8orf33Q9H7E9 229 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 FBRSL1Q9HCM7 1045 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 DMAP1Q9NPF5 467 aaPredicted RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 RAB20Q9NX57 234 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 MRPS17Q9Y2R5 130 aaKnown RBP12.89□□□□□ -0.35
LIG1-217ENST00000599165 WNT6Q9Y6F9 365 aa12.89□□□□□ -0.35
LIG1-217ENST00000599165 CFAP54Q96N23 3096 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 BIN1O00499 593 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 GFRA3O60609 400 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 AP1G2O75843 785 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 CD58P19256 250 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 YWHAQP27348 245 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 SLC7A9P82251 487 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 IFRD2Q12894 506 aaPredicted RBP12.88□□□□□ -0.35
LIG1-217ENST00000599165 PON2Q15165 354 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 EML3Q32P44 896 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 SNX30Q5VWJ9 437 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 FSTL4Q6MZW2 842 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 PKN3Q6P5Z2 889 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 UBR7Q8N806 425 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 FBXL13Q8NEE6 735 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 OSCP1Q8WVF1 389 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 WBP2Q969T9 261 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 MED10Q9BTT4 135 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 TRPM5Q9NZQ8 1165 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 CHMP5Q9NZZ3 219 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 FBXO4Q9UKT5 387 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 EML5Q05BV3 1969 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 ZNF292O60281 2723 aa12.88□□□□□ -0.35
LIG1-217ENST00000599165 LEFTY2O00292 366 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 PSMA7O14818 248 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 COCHO43405 550 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 CLSTN1O94985 981 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 PFKLP17858 780 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 ADORA2BP29275 332 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 RAD23BP54727 409 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 MAP3K7CLP57077 242 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 SATB1Q01826 763 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 ZNF528Q3MIS6 628 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 DCAF17Q5H9S7 520 aaPredicted RBP12.87□□□□□ -0.35
LIG1-217ENST00000599165 TMEM196Q5HYL7 178 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 PPP1R26Q5T8A7 1209 aaPredicted RBP12.87□□□□□ -0.35
LIG1-217ENST00000599165 KLHL10Q6JEL2 608 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 FOXR2Q6PJQ5 311 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 SLC4A11Q8NBS3 891 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 ZBTB44Q8NCP5 570 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 LMO3Q8TAP4 145 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 NELFBQ8WX92 580 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 CYFIP2Q96F07 1278 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 FAXDC2Q96IV6 333 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 TSG101Q99816 390 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 NT5C1AQ9BXI3 368 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 CISHQ9NSE2 258 aa12.87□□□□□ -0.35
LIG1-217ENST00000599165 THG1LQ9NWX6 298 aaKnown RBP12.87□□□□□ -0.35
LIG1-217ENST00000599165 OSER1Q9NX31 292 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms