RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 CNTN6Q9UQ52 1028 aa12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 MTF2Q9Y483 593 aaPredicted RBP12.79□□□□□ -0.36
SHKBP1-213ENST00000597325 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 KANSL1LA0AUZ9 987 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 MED7O43513 233 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 KALRNO60229 2985 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 RETP07949 1114 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 PAEPP09466 180 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 CD19P15391 556 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 IGFBP6P24592 240 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 PCSK1P29120 753 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 GNA15P30679 374 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 GNL1P36915 607 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 ZNF132P52740 706 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 YWHAHQ04917 246 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 E4F1Q66K89 784 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 LIMS2Q7Z4I7 341 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM173Q86WV6 379 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 CEP57Q86XR8 500 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 TMTC1Q8IUR5 882 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 LRRC8AQ8IWT6 810 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 KBTBD7Q8WVZ9 684 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 AUTS2Q8WXX7 1259 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 TMEM176AQ96HP8 235 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 MYADMQ96S97 322 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 OSBPL6Q9BZF3 934 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 PRMT8Q9NR22 394 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 HMGXB4Q9UGU5 601 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 TIMM13Q9Y5L4 95 aaPredicted RBP12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 RALGAPA1Q6GYQ0 2036 aa12.78□□□□□ -0.36
SHKBP1-213ENST00000597325 H7C4K7 107 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 THAP12O43422 761 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 SKILP12757 684 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 TDGF1P13385 188 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 CYP11B1P15538 503 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 TKTP29401 623 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 CLCN1P35523 988 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 DEKP35659 375 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 PRKCIP41743 596 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 RAD23BP54727 409 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 CDK17Q00537 523 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 TSPY1Q01534 308 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 ORC1Q13415 861 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 CSRP2Q16527 193 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 ZNF280DQ6N043 979 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 TSSK4Q6SA08 328 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC47A2Q86VL8 602 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 OSTM1Q86WC4 334 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 ZNF677Q86XU0 584 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 VPS52Q8N1B4 723 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 EPS8L1Q8TE68 723 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 BCL7CQ8WUZ0 217 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 HEXIM2Q96MH2 286 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 SYT15Q9BQS2 421 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 TTPALQ9BTX7 342 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 FAM126AQ9BYI3 521 aaPredicted RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 GPR62Q9BZJ7 368 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 ELOVL4Q9GZR5 314 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 PDCL3Q9H2J4 239 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 HAUS4Q9H6D7 363 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 WDR6Q9NNW5 1121 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 SEPT11Q9NVA2 429 aaKnown RBP12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 KIAA1257Q9ULG3 409 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 WASF3Q9UPY6 502 aa12.77□□□□□ -0.37
SHKBP1-213ENST00000597325 SSU72P8A0A1W2PR75 194 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 ANHXE9PGG2 379 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 GABRDO14764 452 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 AKR1B10O60218 316 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 IPO7O95373 1038 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 URODP06132 367 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 PDGFRBP09619 1106 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 CTSAP10619 480 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 VDRP11473 427 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 FGFR3P22607 806 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 FECHP22830 423 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 ACAT1P24752 427 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 ANXA13P27216 316 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 GBP2P32456 591 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 CYLC1P35663 651 aaPredicted RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 MAGEA9P43362 315 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 LIMK1P53667 647 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 CDR2Q01850 454 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 STILQ15468 1287 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 LPAL2Q16609 132 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 USP41Q3LFD5 358 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 CTXN3Q4LDR2 81 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 SGO2Q562F6 1265 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 TAF3Q5VWG9 929 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 WDR59Q6PJI9 974 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 ANKS3Q6ZW76 656 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 IRF2BP2Q7Z5L9 587 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 DDX53Q86TM3 631 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 ACOT1Q86TX2 421 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 NOP9Q86U38 636 aaKnown RBP12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 SLC4A11Q8NBS3 891 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 B3GALNT2Q8NCR0 500 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 WHAMMQ8TF30 809 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 SHDQ96IW2 340 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 CCDC42Q96M95 316 aa12.76□□□□□ -0.37
SHKBP1-213ENST00000597325 TWNKQ96RR1 684 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms