RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 TLR8Q9NR97 1041 aaKnown RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 LMBRD1Q9NUN5 540 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 SPATA6Q9NWH7 488 aaPredicted RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 DUS2Q9NX74 493 aaKnown RBP11.52□□□□□ -0.57
CLIP3-203ENST00000586457 KIAA1257Q9ULG3 409 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 COQ4Q9Y3A0 265 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 NME7Q9Y5B8 376 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 PCDHB4Q9Y5E5 795 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 TECTAO75443 2155 aa11.52□□□□□ -0.57
CLIP3-203ENST00000586457 C2orf78A6NCI8 922 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 ZNF840PA6NDX5 716 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 H0Y858 1186 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 NRG2O14511 850 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 SLC9A3R1O14745 358 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 PRAMEF12O95522 483 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 MBD3O95983 291 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 ACO1P21399 889 aaKnown RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 MAGEA9P43362 315 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 SLC5A3P53794 718 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 MLLT6P55198 1093 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 MCCD1P59942 119 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 USP46P62068 366 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 GOLGA8FQ08AF8 430 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 GOLGA8DPQ0D2H9 430 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 LRRC32Q14392 662 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 ZNF268Q14587 947 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 SGO2Q562F6 1265 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 CWF19L1Q69YN2 538 aaKnown RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 POTEHQ6S545 545 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 TMEM150AQ86TG1 271 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 TADA2BQ86TJ2 420 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 RALGPS2Q86X27 583 aaPredicted RBP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 DDX42Q86XP3 938 aaKnown RBP eCLIP11.51□□□□□ -0.57
CLIP3-203ENST00000586457 CPA6Q8N4T0 437 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 EHBP1Q8NDI1 1231 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 FAM81BQ96LP2 452 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 TTLL2Q9BWV7 592 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 DUSP16Q9BY84 665 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 LTB4R2Q9NPC1 389 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 HMGXB4Q9UGU5 601 aa11.51□□□□□ -0.57
CLIP3-203ENST00000586457 PMM2O15305 246 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 LAMTOR5O43504 91 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 LRRN2O75325 713 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 ERCC5P28715 1186 aaPredicted RBP11.5□□□□□ -0.57
CLIP3-203ENST00000586457 PLA2G5P39877 138 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CACNA2D1P54289 1103 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 RUNX3Q13761 415 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 MTF1Q14872 753 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CT47A1Q5JQC4 288 aaPredicted RBP11.5□□□□□ -0.57
CLIP3-203ENST00000586457 PPP1R26Q5T8A7 1209 aaPredicted RBP11.5□□□□□ -0.57
CLIP3-203ENST00000586457 TMEM270Q6UE05 265 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 PAQR9Q6ZVX9 377 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 TRIM59Q8IWR1 403 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CCDC105Q8IYK2 499 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SCAMP5Q8TAC9 235 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SH3RF2Q8TEC5 729 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 ATP2A3Q93084 1043 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 RSPRY1Q96DX4 576 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CNOT6LQ96LI5 555 aaKnown RBP11.5□□□□□ -0.57
CLIP3-203ENST00000586457 TWNKQ96RR1 684 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SMOQ99835 787 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 EBF3Q9H4W6 596 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 LMAN1LQ9HAT1 526 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CSNK1G1Q9HCP0 422 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SMPD4Q9NXE4 827 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 GTSE1Q9NYZ3 720 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 CCL26Q9Y258 94 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SH3BP1Q9Y3L3 701 aa11.5□□□□□ -0.57
CLIP3-203ENST00000586457 SPECC1L-ADORA2AF8WAN1 911 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 NFATC1O95644 943 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 RALAP11233 206 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 VDRP11473 427 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 KRT5P13647 590 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 PRKCSHP14314 528 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ATP5C1P36542 298 aaKnown RBP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 USP8P40818 1118 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 PSEN1P49768 467 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 RAD23BP54727 409 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 MFAP3P55082 362 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 MARSP56192 900 aaKnown RBP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 GRSF1Q12849 480 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ANGPT1Q15389 498 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 GBP6Q6ZN66 633 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 CLEC20AQ6ZU45 233 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 RRAGAQ7L523 313 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ENOSF1Q7L5Y1 443 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 C1orf210Q8IVY1 113 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ARHGAP18Q8N392 663 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 SLC4A11Q8NBS3 891 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ANKRD20A12PQ8NF67 263 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 WHAMMQ8TF30 809 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 OSCP1Q8WVF1 389 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 SLC22A12Q96S37 553 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 CDK5RAP1Q96SZ6 601 aaKnown RBP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 ARID3AQ99856 593 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 THAP9Q9H5L6 903 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 LRRC4Q9HBW1 653 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 PNPLA8Q9NP80 782 aa11.49□□□□□ -0.57
CLIP3-203ENST00000586457 UBE2TQ9NPD8 197 aaPredicted RBP11.49□□□□□ -0.57
CLIP3-203ENST00000586457 GCNT4Q9P109 453 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms