RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 EDEM2Q9BV94 578 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 RNF38Q9H0F5 515 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 SNX25Q9H3E2 840 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 SMOC1Q9H4F8 434 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 MAGEF1Q9HAY2 307 aa12.65□□□□□ -0.38
LIG3-209ENST00000586435 DCLK1O15075 740 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 SPTLC2O15270 562 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 KCNK5O95279 499 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 YEATS4O95619 227 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 CST3P01034 146 aaPredicted RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 DLATP10515 647 aaKnown RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 CHRM1P11229 460 aaPredicted RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 TNNI1P19237 187 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 ATICP31939 592 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 TNNC1P63316 161 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 ASIC1P78348 528 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 CREB5Q02930 508 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 DHCR24Q15392 516 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 CRY1Q16526 586 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 BMT2Q1RMZ1 405 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 WDR72Q3MJ13 1102 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 TDRD10Q5VZ19 366 aaKnown RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 TCEAL6Q6IPX3 200 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 UNC13DQ70J99 1090 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 ADGRG2Q8IZP9 1017 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 IQUBQ8NA54 791 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 XXYLT1Q8NBI6 393 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 PDZD8Q8NEN9 1154 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 OR6B3Q8NGW1 331 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 OVCA2Q8WZ82 227 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 TCEAL3Q969E4 200 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 DUSP9Q99956 384 aaKnown RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 C7orf25Q9BPX7 421 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 VRTNQ9H8Y1 702 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 TMEM30AQ9NV96 361 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 CGNQ9P2M7 1197 aaKnown RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 CPQQ9Y646 472 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 CEP192Q8TEP8 1941 aa12.64□□□□□ -0.39
LIG3-209ENST00000586435 ASCC3Q8N3C0 2202 aaKnown RBP12.64□□□□□ -0.39
LIG3-209ENST00000586435 A0A0A0MRY4 1105 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 LNP1A1A4G5 178 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 RTN3O95197 1032 aaPredicted RBP12.63□□□□□ -0.39
LIG3-209ENST00000586435 ADH1CP00326 375 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 PTPN1P18031 435 aaKnown RBP12.63□□□□□ -0.39
LIG3-209ENST00000586435 KCNA4P22459 653 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 GBP1P32455 592 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 CACNA2D1P54289 1103 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 TAF10Q12962 218 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 C2orf27AQ580R0 203 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 ANO7Q6IWH7 933 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 HS2ST1Q7LGA3 356 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 NUP93Q8N1F7 819 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 RDH13Q8NBN7 331 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 B3GALNT2Q8NCR0 500 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 MDGA1Q8NFP4 955 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 OLIG1Q8TAK6 271 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 SCFD1Q8WVM8 642 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 SYAP1Q96A49 352 aaPredicted RBP12.63□□□□□ -0.39
LIG3-209ENST00000586435 DHX58Q96C10 678 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 OTUB2Q96DC9 234 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 TPSD1Q9BZJ3 242 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 ZNF518BQ9C0D4 1074 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 GZF1Q9H116 711 aaPredicted RBP12.63□□□□□ -0.39
LIG3-209ENST00000586435 XYLT2Q9H1B5 865 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 TBC1D14Q9P2M4 693 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 GON4LQ3T8J9 2241 aa12.63□□□□□ -0.39
LIG3-209ENST00000586435 E2F8A0AVK6 867 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 A8MXQ7 604 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.62□□□□□ -0.39
LIG3-209ENST00000586435 CLIC2O15247 247 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 CUTAO60888 179 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 APODP05090 189 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 MBL2P11226 248 aaPredicted RBP12.62□□□□□ -0.39
LIG3-209ENST00000586435 YWHAQP27348 245 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 KIR2DL1P43626 348 aaPredicted RBP12.62□□□□□ -0.39
LIG3-209ENST00000586435 TUBP50607 506 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 CYP2J2P51589 502 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 SEC13P55735 322 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 TRPC3Q13507 836 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 SNX30Q5VWJ9 437 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 RHBDF2Q6PJF5 856 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 SHC4Q6S5L8 630 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 IL17RCQ8NAC3 791 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 ZNF516Q92618 1163 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 CCDC127Q96BQ5 260 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 CHAMP1Q96JM3 812 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 ZNF396Q96N95 335 aaPredicted RBP12.62□□□□□ -0.39
LIG3-209ENST00000586435 PNKPQ96T60 521 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 B3GNT5Q9BYG0 378 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 DPEP3Q9H4B8 488 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 IL37Q9NZH6 218 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 CFAP97Q9P2B7 532 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 ATP8B3O60423 1300 aa12.62□□□□□ -0.39
LIG3-209ENST00000586435 PVALEFA0A1B0GWK0 134 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 FAM92AA1XBS5 289 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 K7ELQ4 463 aaPredicted RBP12.61□□□□□ -0.39
LIG3-209ENST00000586435 KHNYNO15037 678 aaKnown RBP12.61□□□□□ -0.39
LIG3-209ENST00000586435 ALDH1A2O94788 518 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 KAT7O95251 611 aa12.61□□□□□ -0.39
LIG3-209ENST00000586435 ABL1P00519 1130 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms