RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 PMS2CLQ68D20 193 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 RHBDF2Q6PJF5 856 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 VSTM1Q6UX27 236 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 RASSF3Q86WH2 238 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 NELFCDQ8IXH7 590 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 CCDC65Q8IXS2 484 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 MYCBPAPQ8TBZ2 947 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 SPATA18Q8TC71 538 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 CCDC127Q96BQ5 260 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 B3GNT5Q9BYG0 378 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 ZNF518BQ9C0D4 1074 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 CHORDC1Q9UHD1 332 aaPredicted RBP12.4□□□□□ -0.42
LIG3-207ENST00000586119 CFAP47Q6ZTR5 3102 aa12.4□□□□□ -0.42
LIG3-207ENST00000586119 LNP1A1A4G5 178 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 SGK1O00141 431 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 NFATC1O95644 943 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 PTPN1P18031 435 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 PGFP49763 221 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 NOVA1P51513 510 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 CYP2J2P51589 502 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 CDH8P55286 799 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 MYL6P60660 151 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 SLC7A9P82251 487 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 ALCAMQ13740 583 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 E2F4Q16254 413 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 CRY1Q16526 586 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 USP39Q53GS9 565 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 ARMCX6Q7L4S7 300 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 EPM2AIP1Q7L775 607 aaPredicted RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 ALLCQ8N6M5 410 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 TXNDC5Q8NBS9 432 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 ZNF507Q8TCN5 953 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 PLEKHO2Q8TD55 490 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 PIGKQ92643 395 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 ACDQ96AP0 544 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 DHX58Q96C10 678 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 ERLEC1Q96DZ1 483 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 KCNK16Q96T55 309 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 TTLL2Q9BWV7 592 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 SNX25Q9H3E2 840 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 TMEM74BQ9NUR3 256 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 CFAP97Q9P2B7 532 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 MMP17Q9ULZ9 603 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 R3HCC1Q9Y3T6 440 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 FRYQ5TBA9 3013 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 TNRC6BQ9UPQ9 1833 aaKnown RBP12.39□□□□□ -0.43
LIG3-207ENST00000586119 ZFHX4Q86UP3 3567 aa12.39□□□□□ -0.43
LIG3-207ENST00000586119 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 C1QTNF9BB2RNN3 333 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 TRIM24O15164 1050 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 KLF8O95600 359 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 OLFM2O95897 454 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 OAS1P00973 400 aaKnown RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 C1QTNF9P0C862 333 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 MBL2P11226 248 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 TNNI1P19237 187 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 ANXA13P27216 316 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 DHPSP49366 369 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 CASP4P49662 377 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 SHC2P98077 582 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 KDSRQ06136 332 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 WDR72Q3MJ13 1102 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 PAQR9Q6ZVX9 377 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 WDR49Q8IV35 697 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 TMEFF1Q8IYR6 380 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 DEFB119Q8N690 84 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 NAT16Q8N8M0 369 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 IL17RCQ8NAC3 791 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 LINC00301Q8NCQ3 95 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 SCAMP5Q8TAC9 235 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 OLIG1Q8TAK6 271 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 EXOC4Q96A65 974 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 C8orf48Q96LL4 319 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 FNBP1Q96RU3 617 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 TRIM9Q9C026 710 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 BLZF1Q9H2G9 400 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 FSCN3Q9NQT6 498 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 AGPAT3Q9NRZ7 376 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 KBTBD4Q9NVX7 518 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 NXF1Q9UBU9 619 aaKnown RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 MBD1Q9UIS9 605 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 HCN2Q9UL51 889 aa12.38□□□□□ -0.43
LIG3-207ENST00000586119 CIZ1Q9ULV3 898 aaPredicted RBP12.38□□□□□ -0.43
LIG3-207ENST00000586119 A8MXQ7 604 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 TRIM66O15016 1216 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 KHNYNO15037 678 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 ADAM23O75077 832 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 TACC1O75410 805 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 KAT7O95251 611 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 PDIA4P13667 645 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 PDCP20941 246 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 PTGER3P43115 390 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 KIR2DL1P43626 348 aaPredicted RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 NASPP49321 788 aaPredicted RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 NOP14P78316 857 aaKnown RBP12.37□□□□□ -0.43
LIG3-207ENST00000586119 ASIC1P78348 528 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 CYP24A1Q07973 514 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 FOXC1Q12948 553 aa12.37□□□□□ -0.43
LIG3-207ENST00000586119 PSMD6Q15008 389 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms