RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 URODP06132 367 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 CA8P35219 290 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 ADCY1Q08828 1119 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 CFAP221Q4G0U5 840 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 FAM102AQ5T9C2 384 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-207ENST00000580002 SPPL3Q8TCT6 385 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 CDH23Q9H251 3354 aa26.43■■□□□ 1.82
SHMT1-207ENST00000580002 TMEM191CA6NGB0 347 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 SEC24AO95486 1093 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 ATP1A1P05023 1023 aaKnown RBP26.42■■□□□ 1.82
SHMT1-207ENST00000580002 TKTL1P51854 596 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 HADHBP55084 474 aaKnown RBP26.42■■□□□ 1.82
SHMT1-207ENST00000580002 ZNF252P-AS1Q0IIN9 211 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 NFE2Q16621 373 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-207ENST00000580002 DNTTIP2Q5QJE6 756 aaKnown RBP26.42■■□□□ 1.82
SHMT1-207ENST00000580002 DAAM2Q86T65 1068 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 KCTD13Q8WZ19 329 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 SELENOOQ9BVL4 669 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 PBX4Q9BYU1 374 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 DMAP1Q9NPF5 467 aaPredicted RBP26.42■■□□□ 1.82
SHMT1-207ENST00000580002 STRIP2Q9ULQ0 834 aa26.42■■□□□ 1.82
SHMT1-207ENST00000580002 KRT3P12035 628 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 SLC8A3P57103 927 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 TAP1Q03518 808 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 RAB41Q5JT25 222 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 TRIM58Q8NG06 486 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 POF1BQ8WVV4 589 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 ULBP1Q9BZM6 244 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 LRRC4Q9HBW1 653 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 MRPL17Q9NRX2 175 aaKnown RBP26.41■■□□□ 1.82
SHMT1-207ENST00000580002 SIGLEC16A6NMB1 481 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 GRM6O15303 877 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 TEX28O15482 410 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 CXCL14O95715 111 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 CTSAP10619 480 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 CASQ1P31415 396 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 GSCP56915 257 aaPredicted RBP26.41■■□□□ 1.82
SHMT1-207ENST00000580002 SLC6A3Q01959 620 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 CAMK1Q14012 370 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 HFE2Q6ZVN8 426 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 TMC7Q7Z402 723 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 SLFN11Q7Z7L1 901 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 MSANTD4Q8NCY6 345 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 ABCB6Q9NP58 842 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 ALG6Q9Y672 507 aa26.41■■□□□ 1.82
SHMT1-207ENST00000580002 MYO7AQ13402 2215 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 CNPP09543 421 aaKnown RBP26.4■■□□□ 1.82
SHMT1-207ENST00000580002 USP17L7P0C7H9 530 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 DNA2P51530 1060 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 IFRD2Q12894 506 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-207ENST00000580002 RAB6CQ53S08 254 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 DCUN1D2Q6PH85 259 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 SEPT5Q99719 369 aaPredicted RBP26.4■■□□□ 1.82
SHMT1-207ENST00000580002 RAB6CQ9H0N0 254 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 NKX2-4Q9H2Z4 354 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 MRPL47Q9HD33 250 aaKnown RBP26.4■■□□□ 1.82
SHMT1-207ENST00000580002 TMEM59LQ9UK28 342 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 PCDHA11Q9Y5I1 949 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 SCINQ9Y6U3 715 aa26.4■■□□□ 1.82
SHMT1-207ENST00000580002 HIDE1A8MVS5 230 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 TNFRSF10BO14763 440 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 SPATA31D3P0C874 917 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 IRS1P35568 1242 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 FLT3P36888 993 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 ACADSBP45954 432 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 PGFP49763 221 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 MGAT5BQ3V5L5 792 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 SPATA31D4Q6ZUB0 917 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 FUBP3Q96I24 572 aaKnown RBP eCLIP26.39■■□□□ 1.82
SHMT1-207ENST00000580002 WDR35Q9P2L0 1181 aa26.39■■□□□ 1.82
SHMT1-207ENST00000580002 HAPLN1P10915 354 aaPredicted RBP26.38■■□□□ 1.81
SHMT1-207ENST00000580002 COMTP21964 271 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 BHLHA9Q7RTU4 235 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 ALS2CR12Q96Q35 445 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 TCF25Q9BQ70 676 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 TLR10Q9BXR5 811 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 UBXN6Q9BZV1 441 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 CARNS1A5YM72 827 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 ABLIM3O94929 683 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 SLC5A3P53794 718 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 USP46P62068 366 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 MTMR3Q13615 1198 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 SH3PXD2AQ5TCZ1 1133 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 PLPP4Q5VZY2 271 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 NT5DC3Q86UY8 548 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 PSMB7Q99436 277 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 CYLDQ9NQC7 956 aa26.38■■□□□ 1.81
SHMT1-207ENST00000580002 HSFX4A0A1B0GTS1 333 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 HSFX3A0A1B0GWH4 333 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 C5orf67F2Z3F1 127 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 MYO1FO00160 1098 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 CAPN15O75808 1086 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 TCF4P15884 667 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 TFE3P19532 575 aaPredicted RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 MRPS5P82675 430 aaKnown RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 IFI16Q16666 785 aaKnown RBP26.37■■□□□ 1.81
SHMT1-207ENST00000580002 MEI1Q5TIA1 1274 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 SIX6OS1Q8N1H7 587 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 ZNF461Q8TAF7 563 aa26.37■■□□□ 1.81
SHMT1-207ENST00000580002 SPPL2BQ8TCT7 592 aa26.37■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms