RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 BDNFP23560 247 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 CYP2F1P24903 491 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 GRIK1P39086 918 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 PTK2Q05397 1052 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 RAPGEF1Q13905 1077 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 ARHGAP44Q17R89 818 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 SARM1Q6SZW1 724 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 OTOP3Q7RTS5 596 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 FAM71AQ8IYT1 594 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 SLC2A14Q8TDB8 520 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 PSMG2Q969U7 264 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 NAP1L5Q96NT1 182 aaPredicted RBP21.79■■□□□ 1.08
VPS53-210ENST00000571456 SPAG5Q96R06 1193 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 UBXN6Q9BZV1 441 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 CRISPLD1Q9H336 500 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 KCNK12Q9HB15 430 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 CSNK1G1Q9HCP0 422 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 COMMD8Q9NX08 183 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 UXTQ9UBK9 157 aaPredicted RBP21.79■■□□□ 1.08
VPS53-210ENST00000571456 HESX1Q9UBX0 185 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 FHOD1Q9Y613 1164 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 FAM208BQ5VWN6 2430 aa21.79■■□□□ 1.08
VPS53-210ENST00000571456 ZNF197O14709 1029 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 TEX33O43247 280 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 NOL4O94818 638 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 MICAL2O94851 1124 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 CCDC172P0C7W6 258 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 CD19P15391 556 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 DRAP1Q14919 205 aaPredicted RBP21.78■■□□□ 1.08
VPS53-210ENST00000571456 CNGA2Q16280 664 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 TAF12Q16514 161 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 C12orf29Q8N999 325 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 ZNF518BQ9C0D4 1074 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 WDR6Q9NNW5 1121 aaKnown RBP21.78■■□□□ 1.08
VPS53-210ENST00000571456 FAM49BQ9NUQ9 324 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 ZMYM5Q9UJ78 669 aa21.78■■□□□ 1.08
VPS53-210ENST00000571456 GREB1Q4ZG55 1949 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 CCL16O15467 120 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 SP9P0CG40 484 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 ATF6P18850 670 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 EPHA5P54756 1037 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 POLR2FP61218 127 aaKnown RBP21.77■■□□□ 1.08
VPS53-210ENST00000571456 PPP1R26Q5T8A7 1209 aaPredicted RBP21.77■■□□□ 1.08
VPS53-210ENST00000571456 CYP4A22Q5TCH4 519 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 GJB7Q6PEY0 223 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 LCLAT1Q6UWP7 414 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 PAQR9Q6ZVX9 377 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 CACNA2D4Q7Z3S7 1137 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 SCN4BQ8IWT1 228 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 ANKRD52Q8NB46 1076 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 TRMT2BQ96GJ1 504 aaKnown RBP21.77■■□□□ 1.08
VPS53-210ENST00000571456 MYRFLQ96LU7 910 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 DUSP16Q9BY84 665 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 ASAH2Q9NR71 780 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 KRT82Q9NSB4 513 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 IFNKQ9P0W0 207 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 WNT16Q9UBV4 365 aa21.77■■□□□ 1.08
VPS53-210ENST00000571456 ZFP37Q9Y6Q3 630 aaPredicted RBP21.77■■□□□ 1.08
VPS53-210ENST00000571456 ITIH6Q6UXX5 1313 aa21.77■■□□□ 1.07
VPS53-210ENST00000571456 PATJQ8NI35 1801 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 SOBPA7XYQ1 873 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 F8VZ95 297 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 AP1G2O75843 785 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 RTN3O95197 1032 aaPredicted RBP21.76■■□□□ 1.07
VPS53-210ENST00000571456 SETSIPP0DME0 302 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 CCDC130P13994 396 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 STAT1P42224 750 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 BCAT1P54687 386 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 ORC1Q13415 861 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 PABPC1LQ4VXU2 614 aaKnown RBP21.76■■□□□ 1.07
VPS53-210ENST00000571456 DENND5BQ6ZUT9 1274 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 DNAJB7Q7Z6W7 309 aaPredicted RBP21.76■■□□□ 1.07
VPS53-210ENST00000571456 TTC9BQ8N6N2 239 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 SUMF1Q8NBK3 374 aa21.76■■□□□ 1.07
VPS53-210ENST00000571456 NUCKS1Q9H1E3 243 aaKnown RBP21.76■■□□□ 1.07
VPS53-210ENST00000571456 KRBA1A5PL33 1030 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 F8VP50 259 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 O00370 1275 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 FOXN3O00409 490 aaPredicted RBP21.75■■□□□ 1.07
VPS53-210ENST00000571456 GNA15P30679 374 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 PBX1P40424 430 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 USP8P40818 1118 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 PPP3CCP48454 512 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 ATXN1P54253 815 aaKnown RBP21.75■■□□□ 1.07
VPS53-210ENST00000571456 JAM2P57087 298 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 APBA1Q02410 837 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 ZNF677Q86XU0 584 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 XPO4Q9C0E2 1151 aaKnown RBP21.75■■□□□ 1.07
VPS53-210ENST00000571456 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.75■■□□□ 1.07
VPS53-210ENST00000571456 IGSF9Q9P2J2 1179 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 TSPAN16Q9UKR8 245 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.75■■□□□ 1.072e-6■■■□□ 15.1
VPS53-210ENST00000571456 CLUHO75153 1309 aa21.75■■□□□ 1.07
VPS53-210ENST00000571456 A0A1W2PQJ5 194 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 RNF225M0QZC1 329 aaPredicted RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 CLDN5O00501 218 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 NARSO43776 548 aaKnown RBP21.74■■□□□ 1.07
VPS53-210ENST00000571456 CFHP08603 1231 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 ADORA2BP29275 332 aa21.74■■□□□ 1.07
VPS53-210ENST00000571456 CDC25CP30307 473 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms