RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CHP1Q99653 195 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 AGPAT1Q99943 283 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 APOL5Q9BWW9 433 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 UBXN6Q9BZV1 441 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 ADAM7Q9H2U9 754 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 HAUS4Q9H6D7 363 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 SFXN1Q9H9B4 322 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 PNPLA8Q9NP80 782 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 AVENQ9NQS1 362 aaPredicted RBP9.82□□□□□ -0.84
VPS35-211ENST00000569950 ABHD10Q9NUJ1 306 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 TAS2R14Q9NYV8 317 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.82□□□□□ -0.845e-8■■■□□ 19
VPS35-211ENST00000569950 MYO10Q9HD67 2058 aa9.82□□□□□ -0.84
VPS35-211ENST00000569950 TCF20Q9UGU0 1960 aaKnown RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 TCRBV5S1A1TA0A578 114 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 M0QYV0 167 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 ZNF263O14978 683 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 NCK2O43639 380 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 F11P03951 625 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 SETSIPP0DME0 302 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 HOXB8P17481 243 aaPredicted RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 GRIK1P39086 918 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 MRE11P49959 708 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 SLC5A3P53794 718 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 BPIFB4P59827 614 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 RPL10AP62906 217 aaKnown RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 TFF2Q03403 129 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 ARID5AQ03989 594 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 PDCLQ13371 301 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 STILQ15468 1287 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 ASIC2Q16515 512 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 PTPN20Q4JDL3 420 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 PPM1LQ5SGD2 360 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 LIN9Q5TKA1 542 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 SFMBT2Q5VUG0 894 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 PM20D1Q6GTS8 502 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 SCD5Q86SK9 330 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 TMEM110Q86TL2 294 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 ZNF677Q86XU0 584 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 DNAAF5Q86Y56 855 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 C1orf131Q8NDD1 294 aaKnown RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 OR8K1Q8NGG5 319 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 CLEC4CQ8WTT0 213 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 STK32AQ8WU08 396 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 PPM1EQ8WY54 764 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 NDRG1Q92597 394 aaKnown RBP9.81□□□□□ -0.84
VPS35-211ENST00000569950 PPP2R3CQ969Q6 453 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 CEP295NLQ96MC4 621 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 MED10Q9BTT4 135 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 NMUR1Q9HB89 426 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 OSER1Q9NX31 292 aa9.81□□□□□ -0.84
VPS35-211ENST00000569950 COL4A3Q01955 1670 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 COL4A2P08572 1712 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 A0A087X0T9 212 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 FAM170AA1A519 330 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 AKR1B15C9JRZ8 316 aaPredicted RBP9.8□□□□□ -0.84
VPS35-211ENST00000569950 TRIM66O15016 1216 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 PAPSS1O43252 624 aaPredicted RBP9.8□□□□□ -0.84
VPS35-211ENST00000569950 MBTPS2O43462 519 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 ERBB2P04626 1255 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 FYNP06241 537 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 RHOP08100 348 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 FAM228BP0C875 321 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 KCNA5P22460 613 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 GABRB2P47870 512 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 RGS7P49802 495 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 PDE6CP51160 858 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 CDK17Q00537 523 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 CENPCQ03188 943 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 CLUL1Q15846 466 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 CLEC16AQ2KHT3 1053 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 LEXMQ3ZCV2 418 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 C2CD6Q53TS8 623 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 STXBP5Q5T5C0 1151 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 DENND5BQ6ZUT9 1274 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 HFE2Q6ZVN8 426 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 MON1BQ7L1V2 547 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 GRASPQ7Z6J2 395 aaPredicted RBP9.8□□□□□ -0.84
VPS35-211ENST00000569950 DRC7Q8IY82 874 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 NUP93Q8N1F7 819 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 SCML4Q8N228 414 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 SPC24Q8NBT2 197 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 ITFG1Q8TB96 612 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 SHKBP1Q8TBC3 707 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 SMG7Q92540 1137 aaKnown RBP9.8□□□□□ -0.84
VPS35-211ENST00000569950 ADAM33Q9BZ11 813 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 POMKQ9H5K3 350 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 USP15Q9Y4E8 981 aaPredicted RBP9.8□□□□□ -0.84
VPS35-211ENST00000569950 ASB3Q9Y575 518 aa9.8□□□□□ -0.84
VPS35-211ENST00000569950 E5RJQ4 531 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 PIK3R2O00459 728 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 MED7O43513 233 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 LSM8O95777 96 aaKnown RBP9.79□□□□□ -0.84
VPS35-211ENST00000569950 LRG1P02750 347 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 SERPING1P05155 500 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 GJA1P17302 382 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 CEBPBP17676 345 aa9.79□□□□□ -0.84
VPS35-211ENST00000569950 MMP8P22894 467 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms