RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 IFRD2Q12894 506 aaPredicted RBP15.36■□□□□ 0.05
COMMD4-225ENST00000569245 WDR44Q5JSH3 913 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 UNC93AQ86WB7 457 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 CREBRFQ8IUR6 639 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 TTC8Q8TAM2 541 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 ANP32BQ92688 251 aaKnown RBP15.36■□□□□ 0.05
COMMD4-225ENST00000569245 ZFYVE19Q96K21 471 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 LRRC3BQ96PB8 259 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 NELL2Q99435 816 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 BCO2Q9BYV7 579 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 XPO4Q9C0E2 1151 aaKnown RBP15.36■□□□□ 0.05
COMMD4-225ENST00000569245 DNAI2Q9GZS0 605 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 TRPV5Q9NQA5 729 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 RTN4Q9NQC3 1192 aaKnown RBP15.36■□□□□ 0.05
COMMD4-225ENST00000569245 OBP2AQ9NY56 170 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 TRPM5Q9NZQ8 1165 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 MTF2Q9Y483 593 aaPredicted RBP15.36■□□□□ 0.05
COMMD4-225ENST00000569245 PIAS3Q9Y6X2 628 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 NCANO14594 1321 aa15.36■□□□□ 0.05
COMMD4-225ENST00000569245 SOBPA7XYQ1 873 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 NCAM2O15394 837 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 LRRN2O75325 713 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CKMP06732 381 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 PRKCSHP14314 528 aaPredicted RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CD58P19256 250 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CACNA2D1P54289 1103 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 USP46P62068 366 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 VWA3BQ502W6 1294 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 ARHGAP29Q52LW3 1261 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 MIIPQ5JXC2 388 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CC2D1AQ6P1N0 951 aaPredicted RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 FBXL13Q8NEE6 735 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 USP13Q92995 863 aaPredicted RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 SMARCD1Q96GM5 515 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CYP2S1Q96SQ9 504 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 DDX23Q9BUQ8 820 aaKnown RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 NIF3L1Q9GZT8 377 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 VPS16Q9H269 839 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CYP3A43Q9HB55 503 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 APOBEC3GQ9HC16 384 aaKnown RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 LTB4R2Q9NPC1 389 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 TDP1Q9NUW8 608 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 FAM86C1Q9NVL1 165 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 RAB20Q9NX57 234 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 HMGXB4Q9UGU5 601 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 NDRG2Q9UN36 371 aaKnown RBP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 CCL26Q9Y258 94 aa15.35■□□□□ 0.05
COMMD4-225ENST00000569245 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.35■□□□□ 0.05
COMMD4-225ENST00000569245 LGALS16A8MUM7 142 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 TADA3O75528 432 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 AP1G2O75843 785 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 USP17L7P0C7H9 530 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 CCDC130P13994 396 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 HDCP19113 662 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 ANGPT1Q15389 498 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.34■□□□□ 0.05
COMMD4-225ENST00000569245 FAM35AQ86V20 835 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 NUP93Q8N1F7 819 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 CRYBG2Q8N1P7 616 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 C12orf29Q8N999 325 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 SLC2A14Q8TDB8 520 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 FAM3CQ92520 227 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 SEMA4DQ92854 862 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 SLC35C1Q96A29 364 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 KCNK16Q96T55 309 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 NT5C1AQ9BXI3 368 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 OSBPL6Q9BZF3 934 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 NDST4Q9H3R1 872 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 KIF9Q9HAQ2 790 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 KRT82Q9NSB4 513 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 FAM49BQ9NUQ9 324 aa15.34■□□□□ 0.05
COMMD4-225ENST00000569245 C2orf78A6NCI8 922 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 ARNTLO00327 626 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 GLULP15104 373 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 ADORA2BP29275 332 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 CDC25BP30305 580 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 PPP3CCP48454 512 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 PDE6CP51160 858 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 TAF10Q12962 218 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 FUKQ8N0W3 1084 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 ARL14EPQ8N8R7 260 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-225ENST00000569245 PDLIM2Q96JY6 352 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 SLITRK1Q96PX8 696 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 SLC22A12Q96S37 553 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 TTLL2Q9BWV7 592 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 DMAP1Q9NPF5 467 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-225ENST00000569245 GKN1Q9NS71 199 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 TMEM30AQ9NV96 361 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 SPATA6Q9NWH7 488 aaPredicted RBP15.33■□□□□ 0.04
COMMD4-225ENST00000569245 GTSE1Q9NYZ3 720 aa15.33■□□□□ 0.04
COMMD4-225ENST00000569245 KMT2EQ8IZD2 1858 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 TEX33O43247 280 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 RTN3O95197 1032 aaPredicted RBP15.32■□□□□ 0.04
COMMD4-225ENST00000569245 AFPP02771 609 aaKnown RBP15.32■□□□□ 0.04
COMMD4-225ENST00000569245 TARSP26639 723 aaKnown RBP15.32■□□□□ 0.04
COMMD4-225ENST00000569245 YWHAQP27348 245 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 PBX1P40424 430 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 SOX9P48436 509 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 TNK2Q07912 1038 aa15.32■□□□□ 0.04
COMMD4-225ENST00000569245 INCA1Q0VD86 236 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms