RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ADORA2BP29275 332 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 IFRD2Q12894 506 aaPredicted RBP15.94■□□□□ 0.14
VPS39-210ENST00000568357 CCDC105Q8IYK2 499 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 ARL14EPQ8N8R7 260 aaPredicted RBP15.94■□□□□ 0.14
VPS39-210ENST00000568357 DTWD2Q8NBA8 298 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 PJA1Q8NG27 643 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 CSNK1G1Q9HCP0 422 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 DMAP1Q9NPF5 467 aaPredicted RBP15.94■□□□□ 0.14
VPS39-210ENST00000568357 GTSE1Q9NYZ3 720 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 IL37Q9NZH6 218 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 EHD2Q9NZN4 543 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 TRPM5Q9NZQ8 1165 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 RWDD2AQ9UIY3 292 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 ATP8B3O60423 1300 aa15.94■□□□□ 0.14
VPS39-210ENST00000568357 TRAV19A0A0A6YYK7 116 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 PMM2O15305 246 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 USP17L7P0C7H9 530 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 HDCP19113 662 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 YWHAQP27348 245 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 RAD23BP54727 409 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 MARSP56192 900 aaKnown RBP15.93■□□□□ 0.14
VPS39-210ENST00000568357 MAP3K7CLP57077 242 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 TNK2Q07912 1038 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 LRMPQ12912 555 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 FZD5Q13467 585 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 ZNF268Q14587 947 aaPredicted RBP15.93■□□□□ 0.14
VPS39-210ENST00000568357 UBXN2BQ14CS0 331 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 ARHGAP29Q52LW3 1261 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 ZNF852Q6ZMS4 543 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 TRIM59Q8IWR1 403 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 ZNF687Q8N1G0 1237 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 MLKLQ8NB16 471 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 SLC4A11Q8NBS3 891 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 TTC8Q8TAM2 541 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 LMO3Q8TAP4 145 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 HEXIM2Q96MH2 286 aaKnown RBP15.93■□□□□ 0.14
VPS39-210ENST00000568357 FAM83CQ9BQN1 747 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 RNF38Q9H0F5 515 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 LTB4R2Q9NPC1 389 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 GKN1Q9NS71 199 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 CHORDC1Q9UHD1 332 aaPredicted RBP15.93■□□□□ 0.14
VPS39-210ENST00000568357 PIAS3Q9Y6X2 628 aa15.93■□□□□ 0.14
VPS39-210ENST00000568357 EP300Q09472 2414 aaPredicted RBP15.93■□□□□ 0.14
VPS39-210ENST00000568357 RTN3O95197 1032 aaPredicted RBP15.92■□□□□ 0.14
VPS39-210ENST00000568357 GNA14O95837 355 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 ABL1P00519 1130 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 TARSP26639 723 aaKnown RBP15.92■□□□□ 0.14
VPS39-210ENST00000568357 SOX9P48436 509 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 PPP3CCP48454 512 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 SLC5A3P53794 718 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 ZXDBP98169 803 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 CUL2Q13617 745 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 PUM1Q14671 1186 aaKnown RBP eCLIP15.92■□□□□ 0.14
VPS39-210ENST00000568357 PPP1R26Q5T8A7 1209 aaPredicted RBP15.92■□□□□ 0.14
VPS39-210ENST00000568357 CLEC20AQ6ZU45 233 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 CSGALNACT1Q8TDX6 532 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 TMEM176AQ96HP8 235 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 NELL2Q99435 816 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 OSBPL6Q9BZF3 934 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 NUP62CLQ9H1M0 184 aa15.92■□□□□ 0.14
VPS39-210ENST00000568357 THG1LQ9NWX6 298 aaKnown RBP15.92■□□□□ 0.14
VPS39-210ENST00000568357 FAM92AA1XBS5 289 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 OTOL1A6NHN0 477 aaPredicted RBP15.91■□□□□ 0.14
VPS39-210ENST00000568357 HHLA1C9JL84 531 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 MAN2B1O00754 1011 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 LMNAP02545 664 aaKnown RBP15.91■□□□□ 0.14
VPS39-210ENST00000568357 CKMP06732 381 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 FAM200BP0CF97 657 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 PGFP49763 221 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 MLLT6P55198 1093 aaPredicted RBP15.91■□□□□ 0.14
VPS39-210ENST00000568357 PLCB2Q00722 1185 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 KCNH2Q12809 1159 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 TRIM68Q6AZZ1 485 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 GPRIN1Q7Z2K8 1008 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 IRF2BP1Q8IU81 584 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 TTC39CQ8N584 583 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 UBR7Q8N806 425 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 GPT2Q8TD30 523 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 FAM3CQ92520 227 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 FBXO32Q969P5 355 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 GBP4Q96PP9 640 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 SLITRK1Q96PX8 696 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 KIF9Q9HAQ2 790 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 R4GN57 208 aa15.91■□□□□ 0.14
VPS39-210ENST00000568357 FANCMQ8IYD8 2048 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 WDR87Q6ZQQ6 2873 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 P4HA2O15460 535 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 FGFR1OPO95684 399 aaKnown RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 OLFM2O95897 454 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 OAS1P00973 400 aaKnown RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 TRIM21P19474 475 aaKnown RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 KPNA1P52294 538 aaPredicted RBP15.9■□□□□ 0.14
VPS39-210ENST00000568357 ZNF77Q15935 545 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 DPCR1Q3MIW9 517 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 EHBP1Q8NDI1 1231 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 TTC16Q8NEE8 873 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 JAKMIP2Q96AA8 810 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 CLDN23Q96B33 292 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 DUSP16Q9BY84 665 aa15.9■□□□□ 0.14
VPS39-210ENST00000568357 EBF3Q9H4W6 596 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms