RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PARM1Q6UWI2 310 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 GAS2L3Q86XJ1 694 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 FGF14Q92915 247 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 FAM81BQ96LP2 452 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 DNAI2Q9GZS0 605 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 SMOC2Q9H3U7 446 aa20.67■□□□□ 0.9
CLN3-225ENST00000566824 F8VZ95 297 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 FCARP24071 287 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 JAM2P57087 298 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 TPM4P67936 248 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 TAF10Q12962 218 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 GPR158Q5T848 1215 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 TXNDC8Q6A555 127 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 PIGZQ86VD9 579 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 SLC47A2Q86VL8 602 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 RSPRY1Q96DX4 576 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 CEP295NLQ96MC4 621 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 SLC46A2Q9BY10 475 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 STK33Q9BYT3 514 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 SMG9Q9H0W8 520 aaKnown RBP20.66■□□□□ 0.9
CLN3-225ENST00000566824 IFNKQ9P0W0 207 aa20.66■□□□□ 0.9
CLN3-225ENST00000566824 TRIOO75962 3097 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 ANHXE9PGG2 379 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 THAP12O43422 761 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 YWHAQP27348 245 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 CDC25CP30307 473 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 GNA15P30679 374 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 HTR4Q13639 388 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 NEK11Q8NG66 645 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 ZNF606Q8WXB4 792 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 SECISBP2LQ93073 1101 aaKnown RBP20.65■□□□□ 0.9
CLN3-225ENST00000566824 SLC22A12Q96S37 553 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 PLA2G2FQ9BZM2 168 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 RBSNQ9H1K0 784 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 GDE1Q9NZC3 331 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 CHORDC1Q9UHD1 332 aaPredicted RBP20.65■□□□□ 0.9
CLN3-225ENST00000566824 CYTH4Q9UIA0 394 aa20.65■□□□□ 0.9
CLN3-225ENST00000566824 C2orf78A6NCI8 922 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 M0QYV0 167 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 FGF19O95750 216 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 PBX1P40424 430 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 VIPR2P41587 438 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 RGS7P49802 495 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 BCAT1P54687 386 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 UBASH3AP57075 661 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 BST2Q10589 180 aaKnown RBP20.64■□□□□ 0.89
CLN3-225ENST00000566824 FILIP1LQ4L180 1135 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 TANGO2Q6ICL3 276 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 PLCD3Q8N3E9 789 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 ZSCAN18Q8TBC5 510 aaPredicted RBP20.64■□□□□ 0.89
CLN3-225ENST00000566824 NDRG1Q92597 394 aaKnown RBP20.64■□□□□ 0.89
CLN3-225ENST00000566824 FBXO32Q969P5 355 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 ASB16Q96NS5 453 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 CYP2S1Q96SQ9 504 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 KXD1Q9BQD3 176 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 SLITRK6Q9H5Y7 841 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 KCNK12Q9HB15 430 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 GMIPQ9P107 970 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 HESX1Q9UBX0 185 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 MUTYHQ9UIF7 546 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 NUMBLQ9Y6R0 609 aa20.64■□□□□ 0.89
CLN3-225ENST00000566824 FAM92AA1XBS5 289 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 ZNF840PA6NDX5 716 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 XPO1O14980 1071 aaKnown RBP20.63■□□□□ 0.89
CLN3-225ENST00000566824 AP5Z1O43299 807 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 GFPT2O94808 682 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 RTN3O95197 1032 aaPredicted RBP20.63■□□□□ 0.89
CLN3-225ENST00000566824 PRAMEF12O95522 483 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 RFX1P22670 979 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 KIF11P52732 1056 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 RAB41Q5JT25 222 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 PMF1Q6P1K2 205 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 MAB21L3Q8N8X9 362 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 SLC35F5Q8WV83 523 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 LRRC3BQ96PB8 259 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 TASP1Q9H6P5 420 aa20.63■□□□□ 0.89
CLN3-225ENST00000566824 UXTQ9UBK9 157 aaPredicted RBP20.63■□□□□ 0.89
CLN3-225ENST00000566824 ZFP37Q9Y6Q3 630 aaPredicted RBP20.63■□□□□ 0.89
CLN3-225ENST00000566824 HELZP42694 1942 aaKnown RBP20.63■□□□□ 0.89
CLN3-225ENST00000566824 FAM170AA1A519 330 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 PIK3R2O00459 728 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 GPD2P43304 727 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 NOP9Q86U38 636 aaKnown RBP20.62■□□□□ 0.89
CLN3-225ENST00000566824 MON1AQ86VX9 555 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 PASD1Q8IV76 773 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 WDTC1Q8N5D0 677 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 MRPS31Q92665 395 aaKnown RBP20.62■□□□□ 0.89
CLN3-225ENST00000566824 GCNAQ96QF7 691 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 UBXN6Q9BZV1 441 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 XPO4Q9C0E2 1151 aaKnown RBP20.62■□□□□ 0.89
CLN3-225ENST00000566824 NMUR1Q9HB89 426 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 TRPC7Q9HCX4 862 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 PNPLA8Q9NP80 782 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 OSER1Q9NX31 292 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 TRPM5Q9NZQ8 1165 aa20.62■□□□□ 0.89
CLN3-225ENST00000566824 A0A1W2PQC6 194 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 NARSO43776 548 aaKnown RBP20.61■□□□□ 0.89
CLN3-225ENST00000566824 ZDHHC11BP0C7U3 371 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 SOX5P35711 763 aa20.61■□□□□ 0.89
CLN3-225ENST00000566824 PLA2G4AP47712 749 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms