RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 TIGD1Q96MW7 591 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 GSDMAQ96QA5 445 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 TWNKQ96RR1 684 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 SMOQ99835 787 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 FAM126AQ9BYI3 521 aaPredicted RBP15.81■□□□□ 0.12
CLN3-213ENST00000565047 LINC00597Q9H2U6 94 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 TRPC7Q9HCX4 862 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 TRPM5Q9NZQ8 1165 aa15.81■□□□□ 0.12
CLN3-213ENST00000565047 GPR179Q6PRD1 2367 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ZNF638Q14966 1978 aaKnown RBP15.8■□□□□ 0.12
CLN3-213ENST00000565047 CKMP06732 381 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ZDHHC11BP0C7U3 371 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 RPL13P26373 211 aaKnown RBP15.8■□□□□ 0.12
CLN3-213ENST00000565047 ANXA13P27216 316 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 GJA4P35212 333 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 CCR3P51677 355 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ORC1Q13415 861 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 LRRC32Q14392 662 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 GAB4Q2WGN9 574 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 EML3Q32P44 896 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ZNF658Q5TYW1 1059 aaPredicted RBP15.8■□□□□ 0.12
CLN3-213ENST00000565047 PKN3Q6P5Z2 889 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 NUP93Q8N1F7 819 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 SYNPOQ8N3V7 929 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 KIAA1958Q8N8K9 716 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 C12orf29Q8N999 325 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 SCAMP5Q8TAC9 235 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 EZH1Q92800 747 aaPredicted RBP15.8■□□□□ 0.12
CLN3-213ENST00000565047 SEMA4DQ92854 862 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ERCC4Q92889 916 aaPredicted RBP15.8■□□□□ 0.12
CLN3-213ENST00000565047 EEF2KMTQ96G04 330 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 TNIP3Q96KP6 325 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 EPC1Q9H2F5 836 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 ECT2Q9H8V3 914 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 TMEM8AQ9HCN3 771 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 EHD2Q9NZN4 543 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 PCDHA5Q9Y5H7 936 aa15.8■□□□□ 0.12
CLN3-213ENST00000565047 KINO60870 393 aaKnown RBP15.79■□□□□ 0.12
CLN3-213ENST00000565047 P4HA1P13674 534 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 YWHAQP27348 245 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 GTF2H1P32780 548 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 CXCL12P48061 93 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 PGFP49763 221 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 DMWDQ09019 674 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 ANKRD40Q6AI12 368 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 OVCA2Q8WZ82 227 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 ZFRQ96KR1 1074 aaKnown RBP15.79■□□□□ 0.12
CLN3-213ENST00000565047 DUS2Q9NX74 493 aaKnown RBP15.79■□□□□ 0.12
CLN3-213ENST00000565047 WNT6Q9Y6F9 365 aa15.79■□□□□ 0.12
CLN3-213ENST00000565047 EP300Q09472 2414 aaPredicted RBP15.78■□□□□ 0.12
CLN3-213ENST00000565047 DMXL1Q9Y485 3027 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 HHLA1C9JL84 531 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 LEFTY2O00292 366 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 CILPO75339 1184 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 CCDC130P13994 396 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 HOXA6P31267 233 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 PIK3CAP42336 1068 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 GALK1P51570 392 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 SLC5A3P53794 718 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 ADGRG2Q8IZP9 1017 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 SLC2A14Q8TDB8 520 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 ATRIPQ8WXE1 791 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 SMARCD1Q96GM5 515 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 FAXDC2Q96IV6 333 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 HNRNPABQ99729 332 aaKnown RBP15.78■□□□□ 0.12
CLN3-213ENST00000565047 CYP3A43Q9HB55 503 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 DMAP1Q9NPF5 467 aaPredicted RBP15.78■□□□□ 0.12
CLN3-213ENST00000565047 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.78■□□□□ 0.126e-9■■■■■ 134.6
CLN3-213ENST00000565047 RMND1Q9NWS8 449 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 COMMD8Q9NX08 183 aa15.78■□□□□ 0.12
CLN3-213ENST00000565047 HELZP42694 1942 aaKnown RBP15.78■□□□□ 0.12
CLN3-213ENST00000565047 AP1G2O75843 785 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 RTN3O95197 1032 aaPredicted RBP15.77■□□□□ 0.12
CLN3-213ENST00000565047 EGFP01133 1207 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 KRT13P13646 458 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 BMP6P22004 513 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 PDE6CP51160 858 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 NRLP54845 237 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 KRT39Q6A163 491 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 CC2D1AQ6P1N0 951 aaPredicted RBP15.77■□□□□ 0.12
CLN3-213ENST00000565047 DCLK2Q8N568 766 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 ATP2A3Q93084 1043 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 CCDC34Q96HJ3 373 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 NIF3L1Q9GZT8 377 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 CHORDC1Q9UHD1 332 aaPredicted RBP15.77■□□□□ 0.12
CLN3-213ENST00000565047 COQ4Q9Y3A0 265 aa15.77■□□□□ 0.12
CLN3-213ENST00000565047 CHURC1-FNTBB4DL54 471 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 CETN3O15182 167 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 COCHO43405 550 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 HRO43593 1189 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 CHRM1P11229 460 aaPredicted RBP15.76■□□□□ 0.11
CLN3-213ENST00000565047 CD44P16070 742 aaKnown RBP15.76■□□□□ 0.11
CLN3-213ENST00000565047 TGM1P22735 817 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 GRSF1Q12849 480 aaKnown RBP eCLIP15.76■□□□□ 0.11
CLN3-213ENST00000565047 CBWD6Q4V339 395 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 CBWD3Q5JTY5 395 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 CBWD5Q5RIA9 395 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 GPRIN1Q7Z2K8 1008 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 RUBCNQ92622 972 aa15.76■□□□□ 0.11
CLN3-213ENST00000565047 SLITRK1Q96PX8 696 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms