RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OLFM2O95897 454 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 MYL6P60660 151 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 TNNC1P63316 161 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 DHCR24Q15392 516 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 FOXD4L5Q5VV16 416 aaPredicted RBP17.96■□□□□ 0.47
CLN3-211ENST00000564091 TDRD10Q5VZ19 366 aaKnown RBP17.96■□□□□ 0.47
CLN3-211ENST00000564091 TTC30AQ86WT1 665 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 XXYLT1Q8NBI6 393 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 CCDC26Q8TAB7 109 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 FOXD4L4Q8WXT5 416 aaPredicted RBP17.96■□□□□ 0.47
CLN3-211ENST00000564091 C7orf25Q9BPX7 421 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 B3GNT5Q9BYG0 378 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 CFAP97Q9P2B7 532 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 NXF1Q9UBU9 619 aaKnown RBP17.96■□□□□ 0.47
CLN3-211ENST00000564091 MAP1BP46821 2468 aaKnown RBP17.96■□□□□ 0.47
CLN3-211ENST00000564091 LAMA1P25391 3075 aa17.96■□□□□ 0.47
CLN3-211ENST00000564091 KMT2BQ9UMN6 2715 aaPredicted RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 BCLAF3A2AJT9 711 aaKnown RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 A8MXQ7 604 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 OAS1P00973 400 aaKnown RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 FAM163BP0C2L3 166 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 HNRNPLP14866 589 aaKnown RBP eCLIP17.95■□□□□ 0.46
CLN3-211ENST00000564091 PMLP29590 882 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 PPP3CCP48454 512 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 CASP4P49662 377 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 TRPC3Q13507 836 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 FOXD4L6Q3SYB3 417 aaPredicted RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 USP39Q53GS9 565 aaKnown RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 CNNM4Q6P4Q7 775 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 RHBDF2Q6PJF5 856 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 FOXD4L3Q6VB84 417 aaPredicted RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 ZNF396Q96N95 335 aaPredicted RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 EDEM2Q9BV94 578 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 LSM14BQ9BX40 385 aaKnown RBP17.95■□□□□ 0.46
CLN3-211ENST00000564091 ELOVL4Q9GZR5 314 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 XYLT2Q9H1B5 865 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 ANGPTL2Q9UKU9 493 aa17.95■□□□□ 0.46
CLN3-211ENST00000564091 KCNK5O95279 499 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 MBL2P11226 248 aaPredicted RBP17.94■□□□□ 0.46
CLN3-211ENST00000564091 BCKDHBP21953 392 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 CDH8P55286 799 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 EHHADHQ08426 723 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 CRY1Q16526 586 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 EMC10Q5UCC4 262 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 TMEM92Q6UXU6 159 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 UNC13DQ70J99 1090 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 RASSF3Q86WH2 238 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 C12orf40Q86WS4 652 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 B3GALNT2Q8NCR0 500 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 MDGA1Q8NFP4 955 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 PLEKHO2Q8TD55 490 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 ELMO3Q96BJ8 720 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 SLITRK1Q96PX8 696 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 SLC39A2Q9NP94 309 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 CHORDC1Q9UHD1 332 aaPredicted RBP17.94■□□□□ 0.46
CLN3-211ENST00000564091 MMP17Q9ULZ9 603 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 CEP295Q9C0D2 2601 aa17.94■□□□□ 0.46
CLN3-211ENST00000564091 CFAP47Q6ZTR5 3102 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 C4orf47A7E2U8 309 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 K7ELQ4 463 aaPredicted RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 SLC9A3R1O14745 358 aaPredicted RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 POLR2DO15514 142 aaKnown RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 CUTAO60888 179 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 YWHAQP27348 245 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 TIE1P35590 1138 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 SNRPFP62306 86 aaKnown RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 PMS2CLQ68D20 193 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 NUP93Q8N1F7 819 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 ALLCQ8N6M5 410 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 TXNDC5Q8NBS9 432 aaKnown RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 SCAMP5Q8TAC9 235 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 CNOT6LQ96LI5 555 aaKnown RBP17.93■□□□□ 0.46
CLN3-211ENST00000564091 KCNK16Q96T55 309 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 PNKPQ96T60 521 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 SMYD3Q9H7B4 428 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 ZDHHC4Q9NPG8 344 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 ATG2BQ96BY7 2078 aa17.93■□□□□ 0.46
CLN3-211ENST00000564091 KIF26AQ9ULI4 1882 aaPredicted RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 PATE3B3GLJ2 98 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 EXOC3O60645 756 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 PHACTR2O75167 634 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 CLSTN1O94985 981 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 KAT7O95251 611 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 KLF8O95600 359 aaPredicted RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 YEATS4O95619 227 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 STAU1O95793 577 aaKnown RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 ATICP31939 592 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 MRPS21P82921 87 aaKnown RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 PSAPL1Q6NUJ1 521 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 KIAA1958Q8N8K9 716 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 IL17RCQ8NAC3 791 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 RLN3Q8WXF3 142 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 FBXO32Q969P5 355 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 SYAP1Q96A49 352 aaPredicted RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 CIZ1Q9ULV3 898 aaPredicted RBP17.92■□□□□ 0.46
CLN3-211ENST00000564091 UBE4BO95155 1302 aa17.92■□□□□ 0.46
CLN3-211ENST00000564091 LNP1A1A4G5 178 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 SGK1O00141 431 aa17.91■□□□□ 0.46
CLN3-211ENST00000564091 COCHO43405 550 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms