RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 KIAA1586Q9HCI6 787 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 RASSF1Q9NS23 344 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 RBM12Q9NTZ6 932 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 ARGLU1Q9NWB6 273 aaPredicted RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 DNAJC28Q9NX36 388 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 POGKQ9P215 609 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 EIF2B4Q9UI10 523 aaKnown RBP5.53□□□□□ -1.52
VPS35-205ENST00000563984 FZD1Q9UP38 647 aa5.53□□□□□ -1.52
VPS35-205ENST00000563984 ARPC4-TTLL3A0A0A6YYG9 625 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ALG1L2C9J202 215 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 DIRC3C9JPN6 131 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 NDC80O14777 642 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 PJA2O43164 708 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 PLOD3O60568 738 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 TSC22D2O75157 780 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 SCAF4O95104 1147 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 MTHFD1P11586 935 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 ATP6V1B1P15313 513 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ZFXP17010 805 aaPredicted RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 ECHS1P30084 290 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ADSLP30566 484 aaPredicted RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 TCF7P36402 384 aaPredicted RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 HSD17B2P37059 387 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ASMTP46597 345 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 EVCP57679 992 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ERVK-21P61565 698 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 BASP1P80723 227 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 SRSF2Q01130 221 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 DMPKQ09013 629 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 MALLQ13021 153 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 GPS2Q13227 327 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 OASLQ15646 514 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 BMT2Q1RMZ1 405 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 KRTAP15-1Q3LI76 137 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 FAM47AQ5JRC9 791 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 PRAMEF14Q5SWL7 426 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 FCRLBQ6BAA4 426 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 KDELC1Q6UW63 502 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 C1orf122Q6ZSJ8 110 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 MRGPREQ86SM8 312 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 DNAJC10Q8IXB1 793 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ULK2Q8IYT8 1036 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 TMEM57Q8N5G2 664 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 SMYD1Q8NB12 490 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ZNF606Q8WXB4 792 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 PIBF1Q8WXW3 757 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 TBC1D5Q92609 795 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 SGCDQ92629 289 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 CDKL2Q92772 493 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 TNIP3Q96KP6 325 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 COG8Q96MW5 612 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 PRRX2Q99811 253 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 TTPALQ9BTX7 342 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 MMADHCQ9H3L0 296 aaPredicted RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 VPS37BQ9H9H4 285 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 ZCCHC17Q9NP64 241 aaKnown RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 CCM2LQ9NUG4 571 aaPredicted RBP5.52□□□□□ -1.53
VPS35-205ENST00000563984 IL1RAPL1Q9NZN1 696 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 WDR35Q9P2L0 1181 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 CCPG1Q9ULG6 757 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 CARD8Q9Y2G2 431 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 DGKBQ9Y6T7 804 aa5.52□□□□□ -1.53
VPS35-205ENST00000563984 CUX2O14529 1486 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 A0A087X1B8 175 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 J3KRW8 73 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 PDLIM1O00151 329 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 ERC2O15083 957 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 DDHD2O94830 711 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 ITGB1P05556 798 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 VIMP08670 466 aaKnown RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 STMN1P16949 149 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 TYRP1P17643 537 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 PTPN7P35236 360 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 MTNR1BP49286 362 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 RENBPP51606 427 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 INHBCP55103 352 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 RRP1P56182 461 aaKnown RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 MCL1Q07820 350 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 KIF5AQ12840 1032 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CRYMQ14894 314 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 PSMD6Q15008 389 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 C15orf59Q2T9L4 293 aaPredicted RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 KRT71Q3SY84 523 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CCDC14Q49A88 953 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 EFCAB12Q6NXP0 572 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 MTHFD1LQ6UB35 978 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 Q6ZVL8 140 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 RHOUQ7L0Q8 258 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 ZNF572Q7Z3I7 529 aaPredicted RBP5.51□□□□□ -1.53
VPS35-205ENST00000563984 NECAB2Q7Z6G3 386 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 GALNT5Q7Z7M9 940 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 KIAA1328Q86T90 577 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 DGKHQ86XP1 1220 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CEP57Q86XR8 500 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CCDC13Q8IYE1 715 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 OR52K2Q8NGK3 314 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 ZFP28Q8NHY6 868 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CCDC110Q8TBZ0 833 aa5.51□□□□□ -1.53
VPS35-205ENST00000563984 CCHCR1Q8TD31 782 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms