RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 ZNF462Q96JM2 2506 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 ATMQ13315 3056 aa11.12□□□□□ -0.63
SF3B3-204ENST00000563739 URB1O60287 2271 aaKnown RBP11.11□□□□□ -0.63
SF3B3-204ENST00000563739 H0Y626 953 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 TRIM16O95361 564 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 CFIP05156 583 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 EIF2DP41214 584 aaKnown RBP11.11□□□□□ -0.63
SF3B3-204ENST00000563739 MAGEA11P43364 429 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 NEK4P51957 841 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 ZRSR1Q15695 479 aaKnown RBP11.11□□□□□ -0.63
SF3B3-204ENST00000563739 NFE2Q16621 373 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-204ENST00000563739 DUOXA1Q1HG43 343 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 ZNF423Q2M1K9 1284 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 SOWAHAQ2M3V2 549 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 SV2CQ496J9 727 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 GPBP1Q86WP2 473 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 TTC30AQ86WT1 665 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 BRSK2Q8IWQ3 736 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 MYLPFQ96A32 169 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 ACOX2Q99424 681 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 GTPBP2Q9BX10 602 aaKnown RBP11.11□□□□□ -0.63
SF3B3-204ENST00000563739 SLC6A17Q9H1V8 727 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 ST6GALNAC4Q9H4F1 302 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 GDAP2Q9NXN4 497 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 CPQQ9Y646 472 aa11.11□□□□□ -0.63
SF3B3-204ENST00000563739 MGAQ8IWI9 3026 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 ZNF840PA6NDX5 716 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 LAD1O00515 517 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 ARHGAP33O14559 1287 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 TRAK2O60296 914 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 GREM1O60565 184 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SEC24BO95487 1268 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 ITGB3P05106 788 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 HDCP19113 662 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 NDUFV2P19404 249 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 LMO2P25791 158 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 PSMC1P62191 440 aaKnown RBP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 RPL10AP62906 217 aaKnown RBP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 TSPY1Q01534 308 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 ZNF33AQ06730 810 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 CAMK2BQ13554 666 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 MCM6Q14566 821 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 KCNB1Q14721 858 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 NUMA1Q14980 2115 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 DTHD1Q6ZMT9 781 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SPATA18Q8TC71 538 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 FUBP3Q96I24 572 aaKnown RBP eCLIP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SPATA17Q96L03 361 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 ZNF560Q96MR9 790 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 PNKPQ96T60 521 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 LLPHQ9BRT6 129 aaKnown RBP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 RAB34Q9BZG1 259 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SMPD4Q9NXE4 827 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 AGO2Q9UKV8 859 aaKnown RBP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 NOL7Q9UMY1 257 aaKnown RBP11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SLCO1B1Q9Y6L6 691 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 KNL1Q8NG31 2342 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 SHROOM3Q8TF72 1996 aa11.1□□□□□ -0.63
SF3B3-204ENST00000563739 GOLGA4Q13439 2230 aaKnown RBP11.09□□□□□ -0.63
SF3B3-204ENST00000563739 VWA3AA6NCI4 1184 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 H0YCG3 227 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 OPHN1O60890 802 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 PRB1P04280 392 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 PGFP49763 221 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 CASP5P51878 434 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 POU5F1Q01860 360 aaKnown RBP11.09□□□□□ -0.63
SF3B3-204ENST00000563739 RESTQ13127 1097 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 TRIP6Q15654 476 aaKnown RBP11.09□□□□□ -0.63
SF3B3-204ENST00000563739 HSF5Q4G112 596 aaPredicted RBP11.09□□□□□ -0.63
SF3B3-204ENST00000563739 LY6G5CQ5SRR4 150 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 EGFLAMQ63HQ2 1017 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 ADALQ6DHV7 355 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 GLRX5Q86SX6 157 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 NAXDQ8IW45 347 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 SCN4BQ8IWT1 228 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 ADGRF2Q8IZF7 708 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 MYCT1Q8N699 235 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 LRRC52Q8N7C0 313 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 KIAA1958Q8N8K9 716 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 HNRNPLLQ8WVV9 542 aaKnown RBP11.09□□□□□ -0.63
SF3B3-204ENST00000563739 SAAL1Q96ER3 474 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 SPACA7Q96KW9 195 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 HSPA12BQ96MM6 686 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 KIF2CQ99661 725 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 IL21RQ9HBE5 538 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 PARVGQ9HBI0 331 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 ARHGEF4Q9NR80 690 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 CFAP97Q9P2B7 532 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 DKK4Q9UBT3 224 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 PCOLCE2Q9UKZ9 415 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 AGAP1Q9UPQ3 857 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 CABIN1Q9Y6J0 2220 aa11.09□□□□□ -0.63
SF3B3-204ENST00000563739 MYH10P35580 1976 aa11.08□□□□□ -0.64
SF3B3-204ENST00000563739 HOXC11O43248 304 aaPredicted RBP11.08□□□□□ -0.64
SF3B3-204ENST00000563739 TULP3O75386 442 aa11.08□□□□□ -0.64
SF3B3-204ENST00000563739 ALDH1A2O94788 518 aa11.08□□□□□ -0.64
SF3B3-204ENST00000563739 ADH5P11766 374 aa11.08□□□□□ -0.64
SF3B3-204ENST00000563739 PLCG1P19174 1290 aa11.08□□□□□ -0.64
SF3B3-204ENST00000563739 BDNFP23560 247 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms