RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 EPC1Q9H2F5 836 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 GJD2Q9UKL4 321 aa9.65□□□□□ -0.86
VPS39-205ENST00000562258 MARF1Q9Y4F3 1742 aaKnown RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 PARNO95453 639 aaKnown RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 ASS1P00966 412 aaKnown RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 TUBBP07437 444 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 VIMP08670 466 aaKnown RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 SLC39A5Q6ZMH5 540 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 ARHGAP18Q8N392 663 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 SLC25A41Q8N5S1 370 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 ATP11CQ8NB49 1132 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 PYROXD1Q8WU10 500 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 CEP41Q9BYV8 373 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 STMN4Q9H169 189 aaPredicted RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 WNT8AQ9H1J5 351 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 VANGL2Q9ULK5 521 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 INSL6Q9Y581 213 aa9.65□□□□□ -0.87
VPS39-205ENST00000562258 TNRC6CQ9HCJ0 1690 aaKnown RBP9.65□□□□□ -0.87
VPS39-205ENST00000562258 NRP1O14786 923 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CLGNO14967 610 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SH3BP5O60239 455 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TBX4P57082 545 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 ROR1Q01973 937 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 LPIN1Q14693 890 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PPP1R26Q5T8A7 1209 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 WDR59Q6PJI9 974 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CCDC137Q6PK04 289 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 HDXQ7Z353 690 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PCGF5Q86SE9 256 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 APBB2Q92870 758 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 EXT2Q93063 718 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PLCD4Q9BRC7 762 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 MFSD1Q9H3U5 465 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 RAB6BQ9NRW1 208 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PLA2G4CQ9UP65 541 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 A0A0U1RQF3 1178 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 MYBPHLA2RUH7 354 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 GTPBP10A4D1E9 387 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 TBC1D3BA6NDS4 549 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 RGS16O15492 202 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 LTFP02788 710 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TMEM253P0C7T8 217 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 ZNF131P52739 623 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 GPM6BQ13491 265 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 IRF5Q13568 498 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 C15orf59Q2T9L4 293 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 BOLA3Q53S33 107 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CCDC149Q6ZUS6 474 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SLFN11Q7Z7L1 901 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 MCRS1Q96EZ8 462 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 ATXN7L3BQ96GX2 97 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 LPIN3Q9BQK8 851 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TSEN34Q9BSV6 310 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 HOMER3Q9NSC5 361 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CLDND1Q9NY35 253 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 N4BP2Q86UW6 1770 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 CACNA1SQ13698 1873 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 MEIS3P2A8K0S8 358 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 MDM4O15151 490 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 NPR3P17342 541 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PHBP35232 272 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 NOVP48745 357 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PRAMEP78395 509 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SMAD3P84022 425 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 ZC3H12AQ5D1E8 599 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 VARS2Q5ST30 1063 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 HHATQ5VTY9 493 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 KCTD16Q68DU8 428 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CEP128Q6ZU80 1094 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 GET4Q7L5D6 327 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 FBXO22Q8NEZ5 403 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 ATP2A3Q93084 1043 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS39-205ENST00000562258 TMA16Q96EY4 203 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 HHIPL1Q96JK4 782 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TRIM7Q9C029 511 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 NFU1Q9UMS0 254 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CCDC88AQ3V6T2 1871 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CACNA1GO43497 2377 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CASZ1Q86V15 1759 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 UBA6A0AVT1 1052 aaPredicted RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 TKTP29401 623 aaKnown RBP9.64□□□□□ -0.87
VPS39-205ENST00000562258 ARSEP51690 589 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TIGD5Q53EQ6 642 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TAOK1Q7L7X3 1001 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TAS2R42Q7RTR8 314 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SERINC5Q86VE9 423 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SLC9A9Q8IVB4 645 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 NETO2Q8NC67 525 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 IPMKQ8NFU5 416 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 CFAP57Q96MR6 1250 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SYNDIG1Q9H7V2 258 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 SAYSD1Q9NPB0 183 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 IRAK4Q9NWZ3 460 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 TAS2R14Q9NYV8 317 aa9.64□□□□□ -0.87
VPS39-205ENST00000562258 PPEF2O14830 753 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 PPP1R12AO14974 1030 aaPredicted RBP9.63□□□□□ -0.87
VPS39-205ENST00000562258 SLC2A3P11169 496 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 GJA1P17302 382 aa9.63□□□□□ -0.87
VPS39-205ENST00000562258 LMO2P25791 158 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms