RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 AGBL2Q5U5Z8 902 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 EMC10Q5UCC4 262 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 LHX8Q68G74 356 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 LEKR1Q6ZMV7 388 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ACOT1Q86TX2 421 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 CDKL3Q8IVW4 592 aaPredicted RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 DCP1BQ8IZD4 617 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 ABI1Q8IZP0 508 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 IQCKQ8N0W5 287 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 WDTC1Q8N5D0 677 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 C2orf15Q8WU43 125 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 CASKIN2Q8WXE0 1202 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RSAD2Q8WXG1 361 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 P3H4Q92791 437 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ART4Q93070 314 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 SENP8Q96LD8 212 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 APOL6Q9BWW8 343 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 SDCBP2Q9H190 292 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ZWILCHQ9H900 591 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 HAUS2Q9NVX0 235 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 COMMD8Q9NX08 183 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 TMEM161AQ9NX61 479 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RNF186Q9NXI6 227 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS39-204ENST00000561818 CWC15Q9P013 229 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 FETUBQ9UGM5 382 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 GABRQQ9UN88 632 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ZNF148Q9UQR1 794 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 USTQ9Y2C2 406 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 GOLGA8SH3BPF8 625 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 M0QZQ0 153 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PTGESO14684 152 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 APOL1O14791 398 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 DAPK3O43293 454 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 SASH3O75995 380 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CHRNA1P02708 482 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 INHAP05111 366 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PTPN1P18031 435 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 FGFR4P22455 802 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 KDELR1P24390 212 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 SERPINB6P35237 376 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 RFC2P35250 354 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 ADCY8P40145 1251 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 MLH1P40692 756 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PTGIRP43119 386 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 NUBP1P53384 320 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PMS2P54278 862 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 RPL7AP62424 266 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 CDK16Q00536 496 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 ZNF33AQ06730 810 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PDE4CQ08493 712 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CBLBQ13191 982 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 RASA2Q15283 850 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 DPYSL2Q16555 572 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 UPP1Q16831 310 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 SLC25A52Q3SY17 297 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 INTS6LQ5JSJ4 861 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 VSTM1Q6UX27 236 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CENPUQ71F23 418 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 ECHDC2Q86YB7 292 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 ZCCHC9Q8N567 271 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 ALLCQ8N6M5 410 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 MYCBPAPQ8TBZ2 947 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 HDAC7Q8WUI4 952 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 KBTBD7Q8WVZ9 684 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 SEPT8Q92599 483 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CENPIQ92674 756 aaPredicted RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 NTAN1Q96AB6 310 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 LENG1Q96BZ8 264 aaPredicted RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 LRRC39Q96DD0 335 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 ZBTB10Q96DT7 871 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PGAP3Q96FM1 320 aaPredicted RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 PGM2Q96G03 612 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 MS4A3Q96HJ5 214 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 SUSD3Q96L08 255 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CFAP57Q96MR6 1250 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 FAM193BQ96PV7 902 aaPredicted RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 CDK5RAP1Q96SZ6 601 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 SYT15Q9BQS2 421 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 MRPL45Q9BRJ2 306 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 TMEM175Q9BSA9 504 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 MED10Q9BTT4 135 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 DDX23Q9BUQ8 820 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 FAM107BQ9H098 131 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 RETREG1Q9H6L5 497 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 CDHR5Q9HBB8 845 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 POPDC2Q9HBU9 364 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 DMAP1Q9NPF5 467 aaPredicted RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 DDX43Q9NXZ2 648 aaKnown RBP7.86□□□□□ -1.15
VPS39-204ENST00000561818 SENP1Q9P0U3 644 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 FNIP2Q9P278 1114 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PAK5Q9P286 719 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 PCDHB8Q9UN66 801 aa7.86□□□□□ -1.15
VPS39-204ENST00000561818 A0A1W2PQ45 241 aaPredicted RBP7.85□□□□□ -1.15
VPS39-204ENST00000561818 A0A1W2PQY0 241 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 MYADML2A6NDP7 307 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 OR6C75A6NL08 312 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 F8VP50 259 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 H3BRJ5 948 aa7.85□□□□□ -1.15
VPS39-204ENST00000561818 H7C4K7 107 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms