RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 NXF1Q9UBU9 619 aaKnown RBP12.41□□□□□ -0.42
USP3-220ENST00000561381 PCDHA7Q9UN72 937 aa12.41□□□□□ -0.42
USP3-220ENST00000561381 UBE4BO95155 1302 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 MYO16Q9Y6X6 1858 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 CCDC163A0A0D9SF12 145 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 ZNF840PA6NDX5 716 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 LEFTY2O00292 366 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 SLC30A4O14863 429 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 TRIM66O15016 1216 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 TACC1O75410 805 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 F13A1P00488 732 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 CCDC192P0DO97 292 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 ZSCAN22P10073 491 aaPredicted RBP12.4□□□□□ -0.42
USP3-220ENST00000561381 TCF3P15923 654 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 RAP1GAPP47736 663 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 ME1P48163 572 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 TNNC1P63316 161 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 IFRD2Q12894 506 aaPredicted RBP12.4□□□□□ -0.42
USP3-220ENST00000561381 TAF10Q12962 218 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 PSMD2Q13200 908 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 BMT2Q1RMZ1 405 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 GAB4Q2WGN9 574 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 CACNA2D4Q7Z3S7 1137 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 SNX21Q969T3 373 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 TTLL2Q9BWV7 592 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 B3GNT5Q9BYG0 378 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 XYLT2Q9H1B5 865 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 SMOC1Q9H4F8 434 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 SMYD3Q9H7B4 428 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 MAGEF1Q9HAY2 307 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 RYDENQ9NUL5 291 aaKnown RBP12.4□□□□□ -0.42
USP3-220ENST00000561381 SMPD4Q9NXE4 827 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 TRPM5Q9NZQ8 1165 aa12.4□□□□□ -0.42
USP3-220ENST00000561381 HELZP42694 1942 aaKnown RBP12.4□□□□□ -0.42
USP3-220ENST00000561381 A8MXQ7 604 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 DCLK1O15075 740 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 KLRC4O43908 158 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 ABL1P00519 1130 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 OPRD1P41143 372 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CDH8P55286 799 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 SEC13P55735 322 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 NOP14P78316 857 aaKnown RBP12.39□□□□□ -0.43
USP3-220ENST00000561381 TRPC3Q13507 836 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 DMC1Q14565 340 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 KNOP1Q1ED39 458 aaKnown RBP12.39□□□□□ -0.43
USP3-220ENST00000561381 FBXO43Q4G163 708 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 TDRD10Q5VZ19 366 aaKnown RBP12.39□□□□□ -0.43
USP3-220ENST00000561381 RESP18Q5W5W9 173 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 FILIP1Q7Z7B0 1213 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 SFTPA1Q8IWL2 248 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 C12orf56Q8IXR9 622 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CAMKK1Q8N5S9 505 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 B3GALNT2Q8NCR0 500 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 C8orf48Q96LL4 319 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CEP295NLQ96MC4 621 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CNTNAP3BQ96NU0 1288 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CNTNAP3Q9BZ76 1288 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 SERTAD1Q9UHV2 236 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 CPQQ9Y646 472 aa12.39□□□□□ -0.43
USP3-220ENST00000561381 TPRP12270 2363 aaKnown RBP12.38□□□□□ -0.43
USP3-220ENST00000561381 MYOFQ9NZM1 2061 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 PVALEFA0A1B0GWK0 134 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 K7EQS6 105 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 EXOC3O60645 756 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 PHACTR2O75167 634 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 EPN2O95208 641 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 NFATC1O95644 943 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 STAU1O95793 577 aaKnown RBP12.38□□□□□ -0.43
USP3-220ENST00000561381 OLFM2O95897 454 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 OAS1P00973 400 aaKnown RBP12.38□□□□□ -0.43
USP3-220ENST00000561381 CYP17A1P05093 508 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 FAM163BP0C2L3 166 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 SNRPFP62306 86 aaKnown RBP12.38□□□□□ -0.43
USP3-220ENST00000561381 SLC7A9P82251 487 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 FOXK1P85037 733 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 DNM1Q05193 864 aaKnown RBP12.38□□□□□ -0.43
USP3-220ENST00000561381 MESP2Q0VG99 397 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 STK4Q13043 487 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 NR1H3Q13133 447 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 PLK5Q496M5 336 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 PPM1JQ5JR12 505 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 SCARA5Q6ZMJ2 495 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 SYT13Q7L8C5 426 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 SPRYD3Q8NCJ5 442 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 KIAA0895Q8NCT3 520 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 LOXL4Q96JB6 756 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 CHAMP1Q96JM3 812 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 KCNK16Q96T55 309 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 ELOVL4Q9GZR5 314 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 SDCBP2Q9H190 292 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 FAM13BQ9NYF5 915 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 LHX6Q9UPM6 363 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 INVSQ9Y283 1065 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 KIAA1549LQ6ZVL6 1849 aa12.38□□□□□ -0.43
USP3-220ENST00000561381 ABCA7Q8IZY2 2146 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 LRRIQ3A6PVS8 624 aaPredicted RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 ACTN4O43707 911 aaKnown RBP12.37□□□□□ -0.43
USP3-220ENST00000561381 VNN1O95497 513 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 APBB3O95704 486 aa12.37□□□□□ -0.43
USP3-220ENST00000561381 C4BPAP04003 597 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms