RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 RNF135Q8IUD6 432 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CLEC4CQ8WTT0 213 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DDI1Q8WTU0 396 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 P3H4Q92791 437 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PCED1BQ96HM7 432 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GANQ9H2C0 597 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NRDE2Q9H7Z3 1164 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DMAP1Q9NPF5 467 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM161AQ9NX61 479 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 IP6K2Q9UHH9 426 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CDC23Q9UJX2 597 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ITIH6Q6UXX5 1313 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SSU72P8A0A1W2PR75 194 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 H7C4K7 107 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ZBTB24O43167 697 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CST8O60676 142 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DDHD2O94830 711 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 STBD1O95210 358 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 TBX18O95935 607 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GABRR2P28476 465 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ATICP31939 592 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GBP1P32455 592 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MAN1A1P33908 653 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SLCO1A2P46721 670 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 VCPP55072 806 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 YWHAGP61981 247 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CBX1P83916 185 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PDCLQ13371 301 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 TCEA2Q15560 299 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MAP9Q49MG5 647 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ZC3H12AQ5D1E8 599 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 LHX8Q68G74 356 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ELMSAN1Q6PJG2 1045 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 TRIM72Q6ZMU5 477 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ARHGEF18Q6ZSZ5 1173 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CPNE8Q86YQ8 564 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 RHOT1Q8IXI2 618 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NAT16Q8N8M0 369 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SMG8Q8ND04 991 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GDAP1Q8TB36 358 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 LNX1Q8TBB1 728 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DEPDC1BQ8WUY9 529 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 OSBPL9Q96SU4 736 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PCDHB18PQ96TA0 734 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GPR62Q9BZJ7 368 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MUC3BQ9H195 1237 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CHST12Q9NRB3 414 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 UBP1Q9NZI7 540 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CXXC1Q9P0U4 656 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MTRF1LQ9UGC7 380 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MRPS23Q9Y3D9 190 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NOL4O94818 638 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 YWHAQP27348 245 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GLUD2P49448 558 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ATXN1P54253 815 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MAPRE1Q15691 268 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NFIL3Q16649 462 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SOWAHAQ2M3V2 549 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PID1Q7Z2X4 250 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 FAM35AQ86V20 835 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SKA2Q8WVK7 121 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SHC3Q92529 594 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 BAP1Q92560 729 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MCRS1Q96EZ8 462 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SMARCD1Q96GM5 515 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CPXM1Q96SM3 734 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DNAJC7Q99615 494 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 APOL2Q9BQE5 337 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 KATNBL1Q9H079 304 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CYP3A43Q9HB55 503 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 KCNK9Q9NPC2 374 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DMAC2Q9NW81 257 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 SIX4Q9UIU6 781 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 VANGL2Q9ULK5 521 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PCDHGC5Q9Y5F6 944 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 CNTRLQ7Z7A1 2325 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GRIN2DO15399 1336 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GVINP1Q7Z2Y8 2422 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 LRRC10BA6NIK2 292 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 C9IYK1 514 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 POC1B-GALNT4F8VUJ3 575 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SEC31AO94979 1220 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ATF2P15336 505 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 NPR3P17342 541 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 MARCKSL1P49006 195 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 HARS2P49590 506 aaKnown RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 FMO1Q01740 532 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 FAAP100Q0VG06 881 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 TAF10Q12962 218 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 PMF1Q6P1K2 205 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 FAM183BPQ6ZVS7 135 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 GET4Q7L5D6 327 aaPredicted RBP5.69□□□□□ -1.5
VPS13C-209ENST00000560637 MCOLN2Q8IZK6 566 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 CARNMT1Q8N4J0 409 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 TTC39CQ8N584 583 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 JOSD2Q8TAC2 188 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 ABHD8Q96I13 439 aa5.69□□□□□ -1.5
VPS13C-209ENST00000560637 SELENOSQ9BQE4 189 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms