RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 FUBP3Q96I24 572 aaKnown RBP eCLIP12.76□□□□□ -0.37
TPM1-216ENST00000558910 SHDQ96IW2 340 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 SLC22A12Q96S37 553 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 ABCB6Q9NP58 842 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 PRDM9Q9NQV7 894 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 KRT82Q9NSB4 513 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 GTSE1Q9NYZ3 720 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 PIAS3Q9Y6X2 628 aa12.76□□□□□ -0.37
TPM1-216ENST00000558910 KANSL1LA0AUZ9 987 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 TRIM66O15016 1216 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 NOL4O94818 638 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 STAU1O95793 577 aaKnown RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 GLULP15104 373 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 TARSP26639 723 aaKnown RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 SLC19A1P41440 591 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 MAGEA11P43364 429 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 MORC3Q14149 939 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 WDR44Q5JSH3 913 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 VSTM1Q6UX27 236 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 SCAMP5Q8TAC9 235 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 SPATA20Q8TB22 786 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 BPIFB1Q8TDL5 484 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 DEPDC1BQ8WUY9 529 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 IRF7Q92985 503 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 USP13Q92995 863 aaPredicted RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 FBXO32Q969P5 355 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 TNIP3Q96KP6 325 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 ARID3AQ99856 593 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 DUSP9Q99956 384 aaKnown RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 BCO2Q9BYV7 579 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 ELOVL4Q9GZR5 314 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 NIF3L1Q9GZT8 377 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 SPATA6Q9NWH7 488 aaPredicted RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 SMPD4Q9NXE4 827 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 TRPM5Q9NZQ8 1165 aa12.75□□□□□ -0.37
TPM1-216ENST00000558910 UXTQ9UBK9 157 aaPredicted RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 ARMCX3Q9UH62 379 aaPredicted RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 CHORDC1Q9UHD1 332 aaPredicted RBP12.75□□□□□ -0.37
TPM1-216ENST00000558910 ATP8B3O60423 1300 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 TRAV19A0A0A6YYK7 116 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 MAPK13O15264 365 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 BEST1O76090 585 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 GUCA2AQ02747 115 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 PRKCQQ04759 706 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 TAF10Q12962 218 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 ANGPT1Q15389 498 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 CC2D1AQ6P1N0 951 aaPredicted RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 ZNF852Q6ZMS4 543 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 LIAT1Q6ZQX7 453 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 PAQR9Q6ZVX9 377 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 CELF5Q8N6W0 485 aaKnown RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 FBXL13Q8NEE6 735 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 PJA1Q8NG27 643 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 RIN3Q8TB24 985 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 TAF4BQ92750 862 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 DHTKD1Q96HY7 919 aaPredicted RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 HEXIM2Q96MH2 286 aaKnown RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 SRRTQ9BXP5 876 aaKnown RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 EBF3Q9H4W6 596 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 VRTNQ9H8Y1 702 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 LTB4R2Q9NPC1 389 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 GKN1Q9NS71 199 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 RBM12Q9NTZ6 932 aaKnown RBP12.74□□□□□ -0.37
TPM1-216ENST00000558910 RAB20Q9NX57 234 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 KMT2EQ8IZD2 1858 aa12.74□□□□□ -0.37
TPM1-216ENST00000558910 SLC16A3O15427 465 aaKnown RBP12.73□□□□□ -0.37
TPM1-216ENST00000558910 STX10O60499 249 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 GFRA3O60609 400 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 CALCAP01258 141 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 IRF1P10914 325 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 ARSAP15289 507 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 HDCP19113 662 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 YWHAQP27348 245 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 SLC5A3P53794 718 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 STARD6P59095 220 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 LRRC63Q05C16 580 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 PAK1Q13153 545 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 HSP90AA4PQ58FG1 418 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 MON1AQ86VX9 555 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 CCDC105Q8IYK2 499 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 FUKQ8N0W3 1084 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 TMEM174Q8WUU8 243 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 FAM3CQ92520 227 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 E2F7Q96AV8 911 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 SPATA17Q96L03 361 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 C8orf48Q96LL4 319 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 SMOQ99835 787 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 NT5C1AQ9BXI3 368 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 TRPV4Q9HBA0 871 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 TDP1Q9NUW8 608 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 THG1LQ9NWX6 298 aaKnown RBP12.73□□□□□ -0.37
TPM1-216ENST00000558910 WNT6Q9Y6F9 365 aa12.73□□□□□ -0.37
TPM1-216ENST00000558910 CHADO15335 359 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 USP17L7P0C7H9 530 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 FAM200BP0CF97 657 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 MBL2P11226 248 aaPredicted RBP12.72□□□□□ -0.37
TPM1-216ENST00000558910 GTF2H1P32780 548 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 PON2Q15165 354 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 ARHGAP29Q52LW3 1261 aa12.72□□□□□ -0.37
TPM1-216ENST00000558910 COBLL1Q53SF7 1204 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms