RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HEY1Q9Y5J3 304 aa13.48□□□□□ -0.25
LDLR-207ENST00000558013 ENTPD5O75356 428 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 TRUB2O95900 331 aaKnown RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 AP3M2P53677 418 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 NAA25Q14CX7 972 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 ZC3H12AQ5D1E8 599 aaKnown RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 TSHZ1Q6ZSZ6 1077 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 CDHR3Q6ZTQ4 885 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 MOB2Q70IA6 237 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 LONP2Q86WA8 852 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 BANPQ8N9N5 519 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 FAM13CQ8NE31 585 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.47□□□□□ -0.252e-7■□□□□ 10.3
LDLR-207ENST00000558013 TTC8Q8TAM2 541 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 PPP1R13LQ8WUF5 828 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 FGD4Q96M96 766 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 FAM111AQ96PZ2 611 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 ZNF395Q9H8N7 513 aaPredicted RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 F5H423 210 aaPredicted RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 FZD9O00144 591 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 ACKR2O00590 384 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 UGT1A9O60656 530 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 POLR2BP30876 1174 aaKnown RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 GPD2P43304 727 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 YWHAGP61981 247 aaKnown RBP eCLIP13.47□□□□□ -0.25
LDLR-207ENST00000558013 TAP1Q03518 808 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 SCYL2Q6P3W7 929 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 PDIK1LQ8N165 341 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 CMASQ8NFW8 434 aaPredicted RBP13.47□□□□□ -0.25
LDLR-207ENST00000558013 CFAP36Q96G28 342 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 UGT1A7Q9HAW7 530 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 UGT1A10Q9HAW8 530 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 UGT1A8Q9HAW9 530 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 STRIP2Q9ULQ0 834 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 EVPLQ92817 2033 aa13.47□□□□□ -0.25
LDLR-207ENST00000558013 CXorf49A8MYA2 514 aaPredicted RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 E5RJQ4 531 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 IRF6O14896 467 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 B4GALT4O60513 344 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 STAG3L1P0CL83 205 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 PYGBP11216 843 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 MBTD1Q05BQ5 628 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 CCDC15Q0P6D6 951 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 MXD4Q14582 209 aaPredicted RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 SMAD1Q15797 465 aaKnown RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 SEPT7Q16181 437 aaKnown RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 RFWD3Q6PCD5 774 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 RGS9BPQ6ZS82 235 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 TTC7BQ86TV6 843 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 NETO2Q8NC67 525 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 TTC17Q96AE7 1141 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 ADPGKQ9BRR6 497 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 DHRS4Q9BTZ2 278 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 MECRQ9BV79 373 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 BCO2Q9BYV7 579 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 LRMDAQ9H2I8 198 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 FZD8Q9H461 694 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 RPF1Q9H9Y2 349 aaKnown RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 NOP53Q9NZM5 478 aaKnown RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 RGS17Q9UGC6 210 aaPredicted RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 IGKV6-21A0A0C4DH24 114 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 APOC4-APOC2K7ER74 178 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 APOC2P02655 101 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 TFE3P19532 575 aaPredicted RBP13.46□□□□□ -0.25
LDLR-207ENST00000558013 BGNP21810 368 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 CCND1P24385 295 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 TAZQ16635 292 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 CA9Q16790 459 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 PPP1R2P3Q6NXS1 205 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 CXorf38Q8TB03 319 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 RXFP2Q8WXD0 754 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 MIPEPQ99797 713 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 LHX5Q9H2C1 402 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 TXLNGQ9NUQ3 528 aa13.46□□□□□ -0.25
LDLR-207ENST00000558013 SIP14410 1827 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 CFAP69A5D8W1 941 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 E7ESA3 106 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 H7C0C1 242 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 MCF2LO15068 1137 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 CILPO75339 1184 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 RNF8O76064 485 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 TOP3BO95985 862 aaKnown RBP13.46□□□□□ -0.26
LDLR-207ENST00000558013 VTNP04004 478 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 PDGFRAP16234 1089 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 ATP5OP48047 213 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 GRM1Q13255 1194 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 PTK7Q13308 1070 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 OR6B2Q6IFH4 312 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 CEP128Q6ZU80 1094 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 CLNKQ7Z7G1 428 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 TMEM176AQ96HP8 235 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 CLMNQ96JQ2 1002 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 IFT122Q9HBG6 1241 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 RAB6BQ9NRW1 208 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 SENP1Q9P0U3 644 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 ZFP69BQ9UJL9 534 aa13.46□□□□□ -0.26
LDLR-207ENST00000558013 POLR2AP24928 1970 aaKnown RBP13.45□□□□□ -0.26
LDLR-207ENST00000558013 A0A087WZ62 844 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 HCRTO43612 131 aa13.45□□□□□ -0.26
LDLR-207ENST00000558013 ERFP50548 548 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms