RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 ELOVL4Q9GZR5 314 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 KCTD10Q9H3F6 313 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 LMAN1LQ9HAT1 526 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 DMAC2Q9NW81 257 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 TRPM5Q9NZQ8 1165 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 DLGAP2Q9P1A6 1054 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 DOLKQ9UPQ8 538 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MAPK8IP1Q9UQF2 711 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 CITO14578 2027 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 LRRIQ3A6PVS8 624 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 CETN3O15182 167 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MAPK13O15264 365 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 STX10O60499 249 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 KINO60870 393 aaKnown RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 ATP2C2O75185 946 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 LMNAP02545 664 aaKnown RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 F11P03951 625 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 HDCP19113 662 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 TARSP26639 723 aaKnown RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 CASP4P49662 377 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 VAMP7P51809 220 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 CSTF1Q05048 431 aaKnown RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 STIM1Q13586 685 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 ITPRIPL2Q3MIP1 535 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 ZNF528Q3MIS6 628 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MSS51Q4VC12 460 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 SDHAF4Q5VUM1 108 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 LIMS2Q7Z4I7 341 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 OSTM1Q86WC4 334 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 B3GALNT2Q8NCR0 500 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 STKLD1Q8NE28 680 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 ZNF516Q92618 1163 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MYLPFQ96A32 169 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 GSDMAQ96QA5 445 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 TSG101Q99816 390 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 HINFPQ9BQA5 517 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MRPL45Q9BRJ2 306 aaKnown RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MED10Q9BTT4 135 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 FAM126AQ9BYI3 521 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 IL21Q9HBE4 155 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 GKN1Q9NS71 199 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MTF2Q9Y483 593 aaPredicted RBP7.8□□□□□ -1.16
SCFD1-222ENST00000556768 PLXNA3P51805 1871 aa7.8□□□□□ -1.16
SCFD1-222ENST00000556768 MYH11P35749 1972 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 RIF1Q5UIP0 2472 aaKnown RBP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 LRRN2O75325 713 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 NOL4O94818 638 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 C4BPAP04003 597 aaKnown RBP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 SP9P0CG40 484 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 EPB41P11171 864 aaKnown RBP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 PFKLP17858 780 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 PIK3CAP42336 1068 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 GPR15P49685 360 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 CCR3P51677 355 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 FAM160A1Q05DH4 1040 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 ENPEPQ07075 957 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 GRSF1Q12849 480 aaKnown RBP eCLIP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 ZNF268Q14587 947 aaPredicted RBP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 PDGFRLQ15198 375 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 NFIL3Q16649 462 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 ZACNQ401N2 412 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 DGKKQ5KSL6 1271 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 SV2AQ7L0J3 742 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 FAM186BQ8IYM0 893 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 SYNPOQ8N3V7 929 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 CCDC26Q8TAB7 109 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 SECISBP2LQ93073 1101 aaKnown RBP7.79□□□□□ -1.16
SCFD1-222ENST00000556768 SMARCE1Q969G3 411 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 CHAMP1Q96JM3 812 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 C8orf48Q96LL4 319 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 PKMYT1Q99640 499 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 XYLT2Q9H1B5 865 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 CRTAC1Q9NQ79 661 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 GTSE1Q9NYZ3 720 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 DCTN4Q9UJW0 460 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 PCDHGA2Q9Y5H1 932 aa7.79□□□□□ -1.16
SCFD1-222ENST00000556768 VWA8A3KMH1 1905 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 PRR23AA6NEV1 266 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 F8VP50 259 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 SPECC1L-ADORA2AF8WAN1 911 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 NRG2O14511 850 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-222ENST00000556768 RTN3O95197 1032 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-222ENST00000556768 PRAMEF12O95522 483 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 RECKO95980 971 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 MAPK1P28482 360 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 GTF2H1P32780 548 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 CXCL12P48061 93 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 NOP14P78316 857 aaKnown RBP7.78□□□□□ -1.16
SCFD1-222ENST00000556768 MTAPQ13126 283 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 RUNX3Q13761 415 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 EDRF1Q3B7T1 1238 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 WDR44Q5JSH3 913 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 SCARA3Q6AZY7 606 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 UNC93AQ86WB7 457 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 NUP93Q8N1F7 819 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 TTC39CQ8N584 583 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 PDZD8Q8NEN9 1154 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 TTC8Q8TAM2 541 aa7.78□□□□□ -1.16
SCFD1-222ENST00000556768 USP13Q92995 863 aaPredicted RBP7.78□□□□□ -1.16
SCFD1-222ENST00000556768 ATP2A3Q93084 1043 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms