RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 TMEM176AQ96HP8 235 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CNOT6LQ96LI5 555 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 PHOX2BQ99453 314 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CRACR2AQ9BSW2 395 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 DDX23Q9BUQ8 820 aaKnown RBP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 CSNK1G1Q9HCP0 422 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 SMPD4Q9NXE4 827 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 TRPM5Q9NZQ8 1165 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 GMIPQ9P107 970 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 DLGAP2Q9P1A6 1054 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 PIAS3Q9Y6X2 628 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 COL4A2P08572 1712 aa12.27□□□□□ -0.45
CCDC88C-208ENST00000554165 TRAV19A0A0A6YYK7 116 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 KANSL1LA0AUZ9 987 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 H0Y858 1186 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 RNF225M0QZC1 329 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 TULP2O00295 520 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 PMM2O15305 246 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 CHADO15335 359 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 GNA14O95837 355 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 AFPP02771 609 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 CKMP06732 381 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 HDCP19113 662 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 ACO1P21399 889 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 DDX6P26196 483 aaKnown RBP eCLIP12.26□□□□□ -0.455e-6■■■■■ 46.6
CCDC88C-208ENST00000554165 FZD5Q13467 585 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 NAIF1Q69YI7 327 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 GJB7Q6PEY0 223 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 TXNDC11Q6PKC3 985 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 DTWD2Q8NBA8 298 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 EHBP1Q8NDI1 1231 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 SH3RF2Q8TEC5 729 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 TFAP2BQ92481 460 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 DNASE1L2Q92874 299 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 IRF7Q92985 503 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 E2F7Q96AV8 911 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 CEP295NLQ96MC4 621 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 KREMEN1Q96MU8 473 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 ZSWIM1Q9BR11 485 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 INTS2Q9H0H0 1204 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 LINC00597Q9H2U6 94 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 EBF3Q9H4W6 596 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 CCSER2Q9H7U1 834 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 LTB4R2Q9NPC1 389 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 HPS4Q9NQG7 708 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM86C1Q9NVL1 165 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 OBP2AQ9NY56 170 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 IL37Q9NZH6 218 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 NDRG2Q9UN36 371 aaKnown RBP12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 SIT1Q9Y3P8 196 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 WNT6Q9Y6F9 365 aa12.26□□□□□ -0.45
CCDC88C-208ENST00000554165 CYP26A1O43174 497 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 GALR2O43603 387 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 RTN3O95197 1032 aaPredicted RBP12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 TBX18O95935 607 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 OAS1P00973 400 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 USP17L7P0C7H9 530 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 CCDC192P0DO97 292 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 PRKCQQ04759 706 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 ZNF77Q15935 545 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 ZNF852Q6ZMS4 543 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 TTC30AQ86WT1 665 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 ZNF687Q8N1G0 1237 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 PPM1KQ8N3J5 372 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 WBP2Q969T9 261 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 SHDQ96IW2 340 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 NT5C1BQ96P26 610 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM83CQ9BQN1 747 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 DUSP16Q9BY84 665 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 SAMSN1Q9NSI8 373 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 OSER1Q9NX31 292 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 PCDHB4Q9Y5E5 795 aa12.25□□□□□ -0.45
CCDC88C-208ENST00000554165 FAM92AA1XBS5 289 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 LEFTY2O00292 366 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 COCHO43405 550 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 FGFR1OPO95684 399 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 CD19P15391 556 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 SLC9A1P19634 815 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 MTIF2P46199 727 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 KPNA1P52294 538 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 NHLH1Q02575 133 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 USP4Q13107 963 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 GOLGA7BQ2TAP0 167 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 ARHGAP29Q52LW3 1261 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 ARHGAP17Q68EM7 881 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 TMEM270Q6UE05 265 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 C11orf57Q6ZUT1 292 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 UBA3Q8TBC4 463 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 CSGALNACT1Q8TDX6 532 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 PIEZO1Q92508 2521 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 NDRG1Q92597 394 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 CHFRQ96EP1 664 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 FAXDC2Q96IV6 333 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 SLITRK1Q96PX8 696 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 NMUR1Q9HB89 426 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 TRPV5Q9NQA5 729 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 RBM12Q9NTZ6 932 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 NUDT5Q9UKK9 219 aa12.24□□□□□ -0.45
CCDC88C-208ENST00000554165 KIF26AQ9ULI4 1882 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms