RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 LINC01599Q8WXQ3 324 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 RBM41Q96IZ5 413 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 FMO2Q99518 471 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 NGRNQ9NPE2 291 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 DNAJC17Q9NVM6 304 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TRIM17Q9Y577 477 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 HSF2BPO75031 334 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 TRUB2O95900 331 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 ZSCAN5DPP0CG00 497 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 PTPN1P18031 435 aaKnown RBP13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 NDUFV1P49821 464 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 SLC6A3Q01959 620 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 STILQ15468 1287 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 UPP1Q16831 310 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 HSP90B2PQ58FF3 399 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 CFAP58Q5T655 872 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 LRRC38Q5VT99 294 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 SCYL2Q6P3W7 929 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 DSTYKQ6XUX3 929 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 IQCKQ8N0W5 287 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 PCDH10Q9P2E7 1040 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 ASIC3Q9UHC3 531 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 PLAAQ9Y263 795 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 GIT1Q9Y2X7 761 aa13.37□□□□□ -0.27
VIPAS39-206ENST00000553888 MYBPHLA2RUH7 354 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 FKTNO75072 461 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 KDELR1P24390 212 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 BCAT1P54687 386 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 GPS2Q13227 327 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 TFDP3Q5H9I0 405 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 REM2Q8IYK8 340 aaPredicted RBP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 ACBD3Q9H3P7 528 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM124BQ9H5Z6 455 aaPredicted RBP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 SLC38A7Q9NVC3 462 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 CALCOCO1Q9P1Z2 691 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 GABRDO14764 452 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 RNF8O76064 485 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 B3GAT3O94766 335 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 MAP2K2P36507 400 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 TTMPQ5BVD1 217 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 ZC3H12AQ5D1E8 599 aaKnown RBP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 CD300LGQ6UXG3 332 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 PIGZQ86VD9 579 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 HACE1Q8IYU2 909 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 MREGQ8N565 214 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM172AQ8WUF8 416 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 MED10Q9BTT4 135 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 CALN1Q9BXU9 219 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 UNC93B1Q9H1C4 597 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 MAP3K7CLP57077 242 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 PITX1P78337 314 aaPredicted RBP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 ADIGQ0VDE8 80 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 CA9Q16790 459 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM26DQ5JW98 314 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 KCTD16Q68DU8 428 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 ECHDC2Q86YB7 292 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 KCTD6Q8NC69 237 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 UHMK1Q8TAS1 419 aaKnown RBP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM71BQ8TC56 605 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 TMEM209Q96SK2 561 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 KCNK16Q96T55 309 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 CNPY3Q9BT09 278 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 ASNSD1Q9NWL6 643 aa13.36□□□□□ -0.27
VIPAS39-206ENST00000553888 MOXD2PA6NHM9 499 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 LIASO43766 372 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CST8O60676 142 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 ZNF623O75123 536 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CABYRO75952 493 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 IVDP26440 423 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 NRLP54845 237 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 MTFR1Q15390 333 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CCNG2Q16589 344 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 HADHQ16836 314 aaKnown RBP13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 NPNTQ6UXI9 565 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 ZNF280BQ86YH2 543 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 SH2D3CQ8N5H7 860 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 LRRN4Q8WUT4 740 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 TNIP3Q96KP6 325 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 RTP3Q9BQQ7 232 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 KRT82Q9NSB4 513 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 DDX56Q9NY93 547 aaKnown RBP13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CHKAP35790 457 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CLEC20AQ6ZU45 233 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 ARMCX6Q7L4S7 300 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 GPRIN1Q7Z2K8 1008 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 POLNQ7Z5Q5 900 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 CCDC25Q86WR0 208 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 TAB3Q8N5C8 712 aaPredicted RBP13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 TSPAN18Q96SJ8 248 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 SYT15Q9BQS2 421 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 TMEM121Q9BTD3 319 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 FAM204AQ9H8W3 233 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 NEU2Q9Y3R4 380 aa13.35□□□□□ -0.27
VIPAS39-206ENST00000553888 TJP3O95049 919 aa13.34□□□□□ -0.27
VIPAS39-206ENST00000553888 MAP3K6O95382 1288 aa13.34□□□□□ -0.27
VIPAS39-206ENST00000553888 KRT7P08729 469 aa13.34□□□□□ -0.27
VIPAS39-206ENST00000553888 PECAM1P16284 738 aaPredicted RBP13.34□□□□□ -0.27
VIPAS39-206ENST00000553888 HDAC4P56524 1084 aa13.34□□□□□ -0.27
VIPAS39-206ENST00000553888 TERF2Q15554 542 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms