RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 SV2CQ496J9 727 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 SPDYCQ5MJ68 293 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 SDHAF4Q5VUM1 108 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 LMBRD2Q68DH5 695 aaPredicted RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 CBWD2Q8IUF1 395 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 GRAMD1CQ8IYS0 662 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 CEP57L1Q8IYX8 460 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 CCDC33Q8N5R6 958 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 MDGA1Q8NFP4 955 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 CACTINQ8WUQ7 758 aaKnown RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 TRMT2BQ96GJ1 504 aaKnown RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 PAGE5Q96GU1 130 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 SLC22A12Q96S37 553 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 ACBD6Q9BR61 282 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 KIAA1586Q9HCI6 787 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 ABCB6Q9NP58 842 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 AGPAT3Q9NRZ7 376 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 TMLHEQ9NVH6 421 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 HSPBP1Q9NZL4 362 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 SIX4Q9UIU6 781 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 CIZ1Q9ULV3 898 aaPredicted RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 MMP17Q9ULZ9 603 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 ATP6V1DQ9Y5K8 247 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 GON4LQ3T8J9 2241 aa12.63□□□□□ -0.39
SRP54-203ENST00000553544 KIF26AQ9ULI4 1882 aaPredicted RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 ZNF638Q14966 1978 aaKnown RBP12.63□□□□□ -0.39
SRP54-203ENST00000553544 PTPRDP23468 1912 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 SPAARA0A1B0GVQ0 90 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 FAM221BA6H8Z2 402 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ZNF233A6NK53 670 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 UPK3BL1B0FP48 263 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 UPK3BL2E5RIL1 263 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 NOL4O94818 638 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 NFATC1O95644 943 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ITGB3P05106 788 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ENGP17813 658 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 CYP2F1P24903 491 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 POLR2BP30876 1174 aaKnown RBP12.62□□□□□ -0.39
SRP54-203ENST00000553544 ATXN3P54252 364 aaPredicted RBP12.62□□□□□ -0.39
SRP54-203ENST00000553544 SEMA3BQ13214 749 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 SURF1Q15526 300 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 SLC23A3Q6PIS1 610 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 C12orf56Q8IXR9 622 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 TMEFF1Q8IYR6 380 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 HDDC3Q8N4P3 179 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 LRRC52Q8N7C0 313 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ARL14EPQ8N8R7 260 aaPredicted RBP12.62□□□□□ -0.39
SRP54-203ENST00000553544 OLIG1Q8TAK6 271 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 SH3RF2Q8TEC5 729 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 RLN3Q8WXF3 142 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 FAM84AQ96KN4 292 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 SPACA7Q96KW9 195 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ZNF560Q96MR9 790 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 POLMQ9NP87 494 aaPredicted RBP12.62□□□□□ -0.39
SRP54-203ENST00000553544 SLC39A2Q9NP94 309 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 TMEM74BQ9NUR3 256 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 INTS13Q9NVM9 706 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 USP25Q9UHP3 1055 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 KLK13Q9UKR3 277 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 ITGA11Q9UKX5 1188 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 AGAP1Q9UPQ3 857 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 PTPRJQ12913 1337 aa12.62□□□□□ -0.39
SRP54-203ENST00000553544 EML5Q05BV3 1969 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 ASCC3Q8N3C0 2202 aaKnown RBP12.61□□□□□ -0.39
SRP54-203ENST00000553544 TAF4O00268 1085 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 HUS1O60921 280 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 TCF3P15923 654 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 P2RY2P41231 377 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 PTGER3P43115 390 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 PDE6CP51160 858 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 RBP5P82980 135 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 KCNB1Q14721 858 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 HSF5Q4G112 596 aaPredicted RBP12.61□□□□□ -0.39
SRP54-203ENST00000553544 TMEM92Q6UXU6 159 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 PIP4P1Q86T03 277 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 NELFCDQ8IXH7 590 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 ADGRG2Q8IZP9 1017 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 CSGALNACT2Q8N6G5 542 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 STKLD1Q8NE28 680 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 OR5B17Q8NGF7 314 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 CEP76Q8TAP6 659 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 WHAMMQ8TF30 809 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 FNBP1Q96RU3 617 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 MTMR12Q9C0I1 747 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 SCAND2PQ9GZW5 306 aaPredicted RBP12.61□□□□□ -0.39
SRP54-203ENST00000553544 GDAP2Q9NXN4 497 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 GCNT4Q9P109 453 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 BCCIPQ9P287 314 aaKnown RBP eCLIP12.61□□□□□ -0.39
SRP54-203ENST00000553544 CGNQ9P2M7 1197 aaKnown RBP12.61□□□□□ -0.39
SRP54-203ENST00000553544 GTF3C4Q9UKN8 822 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 ARHGAP26Q9UNA1 814 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 CACNA1EQ15878 2313 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 WDFY3Q8IZQ1 3526 aa12.61□□□□□ -0.39
SRP54-203ENST00000553544 THADAQ6YHU6 1953 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.6□□□□□ -0.39
SRP54-203ENST00000553544 A0A1W2PQ27 194 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 A0A1W2PQ64 194 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 A0A1W2PQD8 194 aa12.6□□□□□ -0.39
SRP54-203ENST00000553544 TULP1O00294 542 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms